RNA id: TCONS_00059058


Basic Information

Item Value
RNA id TCONS_00059058
length 1037
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id XLOC_030204
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32260163 ~ 32264060 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCCTACAGTTTAATCATCTTCAGAATGCCGCAAGCACACAGCGTGACCGCGAGTCGCATGACAAAAGCTGACTGATCAGGTTCTTAGTATAAAATATGCACATTTCGGTAAACTAACTACCTCAAACATTGAACACCCAAACACCACAATTTTCATCTTAGCTAAAAGGTCTAAGCTCCTTGGCTTATATCAGAActgcagcaatgttttttttatttgtcatcctctgagaaagcAGCTaattgatggtcgcctagcaacaacaaaaaagcaacgAAAATGCCGAAGGAACCGCCTCTCGCTTTCCACGCGCTTTCAGAGACGCGATATGCACGCGGCCCACAAACCTACCTAAATGAAGAATTGATGTTCATTTAAAACGCGTCACGGCTCTTGGCTCTGAGCTTGTTGACCTGGGACTCAGCTATATCAGCACGCTCCTCAGCCTCCTCCAGCTCATGCTGCACCTTCCTCAACTTGGACAGTTTCTGGAGTTGTTTCTTTCCTCCCTTCATGGCCAGATTCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTGACTGTGATCTCCAGATTCTTCTTCATCCTCTCAAGTGTCTTCAACTTCACTCTGGATCTGAACAAGGTCAGCCTCAAGCTTCTTCTTGGTGTTCAGAAGACTTGTGTTCTACAACATGGAAAGCAACAATATAAATGTATTGGAAGATGCTTTCAGCTATCTTAATGACATtgtacaaaagaaaacaaaaaacaaagctatTATTCTTTTACCTGAGAGTGCAGCAGCCCAACACGCTCACTGGCATCCACCAACTCTTGTTCAGCCACTTTGCGTCCTCTCTCTGTCTGCTCCAGAGCAGCTCTCAGCTCCTCAATCTCAGACTGCATCAGAGTGTTTCTGCGCTCCACCATGGCCACCTGCTCCTTCATGTCTTCCTGTCCTCTCACGGCATCATCAAGGTGCAGCTGGGCATCCTGAACACAACAGAGTAGTTGTTTTATGAAATGTAATAAATCTCTTTTAGATAAAGGTGGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0003012 muscle system process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061731 lncRNA upstream 173586 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00059039 lncRNA upstream 265609 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 342027 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 348085 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 391794 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00061733 lncRNA downstream 94820 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 586779 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059076 lncRNA downstream 618640 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059079 lncRNA downstream 619533 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059086 lncRNA downstream 664774 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059056 mRNA upstream 2847 32246872 ~ 32257316 (+) False XLOC_030203
TCONS_00059057 mRNA upstream 2914 32247310 ~ 32257249 (+) True XLOC_030203
TCONS_00059055 mRNA upstream 26301 32228538 ~ 32233862 (+) True XLOC_030202
TCONS_00059053 mRNA upstream 26303 32221755 ~ 32233860 (+) False XLOC_030202
TCONS_00059054 mRNA upstream 26303 32222303 ~ 32233860 (+) False XLOC_030202
TCONS_00059059 mRNA downstream 81127 32345187 ~ 32355289 (+) False XLOC_030205
TCONS_00059061 mRNA downstream 226178 32490238 ~ 32498736 (+) False XLOC_030207
TCONS_00059062 mRNA downstream 226535 32490595 ~ 32498557 (+) True XLOC_030207
TCONS_00059064 mRNA downstream 527185 32791245 ~ 32793481 (+) True XLOC_030209
TCONS_00059065 mRNA downstream 551685 32815745 ~ 32833358 (+) False XLOC_030210
TCONS_00059050 other upstream 77435 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059033 other upstream 315441 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 391535 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 711376 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1433271 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059060 other downstream 81129 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 373588 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 594368 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 618647 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059080 other downstream 621145 32885205 ~ 32885331 (+) True XLOC_030212

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013121 True 477 mRNA 0.53 5 CM030125.1 21350662 ~ 21359707 (+)