RNA id: TCONS_00059055


Basic Information

Item Value
RNA id TCONS_00059055
length 416
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_030202
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32221755 ~ 32233862 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGAAATCAATGCTGAACTGACAGCCAAGAAGAGGAAACTGGAGGACGAGTGCTCTGAGCTGAAGAAAGACATTGATGACCTGGAGCTCACCTTGGCTAAAGTGGAAAAGGAGAAACATGCCACTGAGAATAAGGTCAAGGCTTACAAGAGGCAGTCTGAAGAAGCTGAGGAACAAGCCAACTCTCACCTGTCCAAGTTGAGGAAGGTGCAGCATGAGCTGGAGGAGGCTGAGGAGCGCGCTGACATTTCTGAGTCCCAGGTCAACAAGCTCAGAGCCAAAAGCCGTGACGCTGGAAAGgCCAAAGAAGAGTGAAGGGTTTAAGAACTCTTAAACCCGAATAGAAGCTCCACTGAAGTCATATAATATGACTGTTCAGAAGagatacttttaaataaatatgtttttagagGAA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6206 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in fin; musculature system; segmental plate; and trunk. Orthologous to human MYH13 (myosin heavy chain 13).

Ensembl:

ensembl_id ENSDART00000077471

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061731 lncRNA upstream 141961 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00059039 lncRNA upstream 233984 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 310402 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 316460 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 360169 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00061732 lncRNA downstream 26301 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00059058 lncRNA downstream 26301 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061733 lncRNA downstream 125018 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 616977 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059076 lncRNA downstream 648838 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059051 mRNA upstream 10959 32206378 ~ 32217579 (+) False XLOC_030201
TCONS_00059052 mRNA upstream 10963 32206523 ~ 32217575 (+) True XLOC_030201
TCONS_00059049 mRNA upstream 45856 32162684 ~ 32182682 (+) False XLOC_030200
TCONS_00059048 mRNA upstream 80009 32141790 ~ 32148529 (+) True XLOC_030199
TCONS_00059046 mRNA upstream 148346 32076109 ~ 32080192 (+) False XLOC_030197
TCONS_00059056 mRNA downstream 13010 32246872 ~ 32257316 (+) False XLOC_030203
TCONS_00059057 mRNA downstream 13448 32247310 ~ 32257249 (+) True XLOC_030203
TCONS_00059059 mRNA downstream 111325 32345187 ~ 32355289 (+) False XLOC_030205
TCONS_00059061 mRNA downstream 256376 32490238 ~ 32498736 (+) False XLOC_030207
TCONS_00059062 mRNA downstream 256733 32490595 ~ 32498557 (+) True XLOC_030207
TCONS_00059050 other upstream 45810 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059033 other upstream 283816 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 359910 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 679751 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1401646 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059060 other downstream 111327 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 403786 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 624566 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 648845 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059080 other downstream 651343 32885205 ~ 32885331 (+) True XLOC_030212

Expression Profile

//