RNA id: TCONS_00061735


Basic Information

Item Value
RNA id TCONS_00061735
length 5846
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_030221
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33332449 ~ 33338469 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGTTTTATCTTCCATGTTTTATAAAGAAAGTTACAAAtataagttgtggttgagctgcTTGAATGCATCCATCACTTAGGAATACAAACGGCATCTTTAAAATTTCAAGCATCCATTTTTATATCTCGCCGCGGGCCATGCAGCTTTCAGCATGAGCATCTTGTCCTCACAGTTACCTTAATGCATCTTGTTGATCTTCATCAGCGCTTCATCCCCACGTGTCCTCAAAACCCCCACCCTTCATCTCGTTTCCAGCCCCTCTTTGTCCTCGCAGCCCCGGCAACATTCCTCCAGCAGCTTCCCGTAAGCACATCGTCTGACTGGGAAGCTGAATATTTAGATGTCAAAAGCAGAACCCTGTGTCTGAAGAaaagaggagaggaggaggaAAGACCACCCATCCGAGCGCCTGCTGGAGAATCGACTGTCATCATTTTCTTCCCGAAGTGAGTCGTCATTCCTCTTGTTTTTGCGCAAATGCTCCATCTGGCTTTCGTTATGTTAAGGGTCATTTTTGGAAACGGACATGCTTTGTGTATTATGTAAAGAATAACATCTTGCTGGCGTGGTCTGCTGTCTCTAAACATTAGCAAGTTAGCTGAGCTACAGAGGCATCTGTCTGCTTTTTTAACGCTGAAGAGCCTAATTAGGTTAATGTTCGTCAAAATacgtgtaaatgagtgtatgtgaattgATTTATGGCTTGGTTGAAAAACATTAGTTGCTTTGTTTAAATGAAACACCTCTGAATTATGGTTATTGAACTGTATTGTATTGTGTTACCAAAAATTAGCGTTACttttaaaatattgatatttgttttatttctgatagcattttatttaaaagtcGAATAAAAACGAAAccatttaaagttaattttcttGCCAGGAAATGTTTTTAAGAGTAAAAGAAAAATGTGTTGATCCACCAAATATgctatttttatgcaaaaataaataggaaaaattaagaaagaaaagaaaataaacacgCACTTTACCCTCCTGACATGATATGGTCAAATCTGACCAATTTACAACTGAAAACACTCATAAATAATGTGTTTTACATTAAATTCCCTCATTATGATATCCTCCGAACTATGCACTTGATTATATAAAAGTGATTATCACCTTTTTTTGTTGAATTTTGAGGATTTTAATCAACTGTATTACAACTTGTGTTACCAGTCAAAAGTGACCGCATAGGAAATAAATGGGTATCCAGACTATATTCAAGAAAACATCACCATACACACCACtccaactcactcactcacacacatttcAGACTGAACAATGTCTTTTGTGGGTACACATGTCTTTCCCATGCTTATATGCGAATCCTCCCTATGCCAATTGTAATACATTTCAGTgcctatttgtattttcactacagttgttttatgtctaattctataaatttatcttaaactactttgagacattgtttccagctaaagaatgttgaataaataTTTGGTGGTGAAAAATGCTTTTTGAGCACTTTAACAGCAGTTAAAGAGAGTGGTCAATTTCGAGCTGAACACAATAGGAGggttaaatgacaaaaatatatacatatattaaatgagcaattttccatacaaaaatacattttactcaaacacatttttttttacacataaaaaataaattcaaagaaaaatacttaaaatcataattttacattttaattgataCATTAATTTGTTTAGTAGATGTATAAACTAATTTGTAAAAAGCTCTTCATGCATTATTATCACTTGCAGATTTATGCTTAAAGTCCTAATTTAAGATGAAAGAATCTTCATAAATTCAGAGATATTTTTATGCAGATGATTTAACAGCTCAGATAGTGCTTGTAAAATGTTTGctataaacttttttaaaatttttaaatgtttcatgttaaattgtattattatgtgctttttaaataataaaacatccctgtatttaattacatttaattgccAATTTACAAAAAATTGCTGTGAAAATTACATACCAACATAATTTAGAGGTAATTTTGTGGTTGCCAAGTAGTAAATCAGCAAACCTAATATGATGTCTCTATAAAAGTGATTCCTTCAGTAATTTCAGACACAAAGGCGGTAGCGAGAGGCGTTAACCATGCGCTCACAGCAGTGTTGTCAACCAGCGCAGCATCACATCAGGCGTGAGGTAATAACCTCATGGCTGTGAGCTGAATTTTTAATGGAGCTTGTTATTAACAGTTCAGCGAGTGCAGAGCTTGTGCTTCCCTTTTGGTCGTCACAGCTTGAGTGCTCGAAATGATCAAAGCAAAATTATTCAGATGTACTCCTATTAACAGATTTATATAACATCCAATGCTGTAATGCAATGAACTGATGAAACCCGTACCCCTGCATTGCTAGATTACAGATTGCATGAGGAAGAAACTAGTTACAGGATGATGTTAGTGACCGTATCAGTTATTACTgggtaaaacattttttattaaaatattacaaaaacactAGAACATTGTTAAATATTTCCTGCCTTATGTACACTAATCTTGGAAGTGTTGCCcataagttttagaaacaacaaataataacttgacttctagttgatcatttattaTTAGAAGTTATTAGAAGTGGCATATATGAAAGCCAATggtctctagattacgcttattttgccaaaatataatatgatcatgccttgatttttaatgatttgattaggatagtaaggtctgactttgttacttaacagaaatgatgtccaatatagaatataaagtcatggtgcagtggaaaatgaattaatattgtggatgactcccatgagcttggatgattgcatccatacatctctgcaataactcaaataacttattaataaagtcatctggaatggcaaagagagcgttcttgcaggaatcccagagttcatcaagattctttgggttcatcttcaatgcctcctcattcatcttaccccagacatgctcaataatgttcatgtctggtgactgggctggccaaccctggagcaccttgatcttctttgctttcaggaactttgatgtggaggctgaagtatgagaaggctatcctgctgaagaacttgccTTCTcatttgtattatatatatatatatatatatatatatatatattgcttgctTGCATCTATGAAATGCTTGTGCATTTTTCTACATACTTATTGTGTATACAGAGTAGAAACATAGCACTGATGTCGTGTTAGTGATGGAGGTTCTGGTTGATCAACTAGTTCATGTTTCATCATGACAGTTCTGACTATTCAGATCAATAAGATCATCAAACTAACTGTTTCAGTCTGTGAGTATGTGATTTTAAAAGAATGATGGTATgggatttttacatttaaatgtgatTCTAAATGTATATTAcaattgtttattaaagtgttttttttttatcttggatGAACATAAACCTCCAGAACAAAACAAGGAGTATTTAAAATGGAGCACTTTAAATGTAGACTGAAAAAAATGTcttgtacatttttacaaataattaaaaaaaataatgatgaaaacaaaacatataattattaatgaCATCACTTGATAAGGTAATTACAatttttgaattttaataatttaaaagaatttATGGGAAAATAACGCTGTATTgtcatatttgtttaatttacagctttaagaaatatatatattttacaatttaatatttaGCTAATTTAGCATATAACAATTGACTTCAGTAAATAGACGGTATCATCTAACTGCACATCAGAGCTGGTATTTTGAAATGCTGGTTTCAGTTTAAATGAAACCCAGTGTTTAATTGATCATGGTAAGTGCTAATTATCACCGTTGTTAAGAAGACGCCTTTCTTCCTCCATGTGAGGGTGGTTTAAGTCATGACTGCTTTGTTTTCTTCGTTTTCCAGGCATCCAATTATGGTGTCAAAATTTCACtgtgttaaatataattttaaaggcAGTTCATGTTCAATTTACAACTAGGAAACTCATATTCTGATTGCAAATGAAAGCAGCATGAGTCTTATACTCAGGGATCTTGTAAACAGCAGTCTACCTTACTTCTGAAAGTTAATTGAAATGAGATTTTCTCAGACGATGCTACTGATTGTGTTGTGTTTCTTTCCCCAGAGTGCCAATAACACCACCGAGACTTCGGCTACAAAAGCAACAATGATCACAGTCACACCCGGGAGTATCAGCTTCACTTACCTTTAACGAAGCCTAAGAAGGAACTTCATTAGCTTCTGATATTCAATCTGTAGATAATGTGAGTTCAAAGTAAAGTGAAAACTGAGGTGTGGAGCTACATTCTCTGTAGATAAACACAGCTATCTGATAACATATTTCAGTTTTCATCATATTTCTAAGTAACACTAACAGTTCGATTTCTGTTCCGGTATTTGCACTAGGCTTACTGTTGACCTGGTAAATGTGTCACCTTTTCAGGTAGTCCTCAGTCTCTTTGTGGTCAGCAATGCACACGCTACAACGGTTTGACTCATAATACCTCTGCCTTTTCTTGTATCAATGCATCCTTTTTTGCATTTGTGTTGTACTCCACCTTGTAATTGTGACTACCTCCAGGCAAGGCTTTGAACAAAGCATTCCTAGGAAGGATACACTTAAAAAGAGTTGCTTTCTCACGCTCTCTTTTCCATTTCCTGTGGCTTTTCTCATTATTTGCCATCATATGTCATGTCAGAGTGTCTGATGTTTCCCTAGTGACAGCCGGGGCTtgaatgagtaaattatgatggtGTGCTCCTGTTTAGACCTGTTAAAAGGTGACATCATTTAGgcagttttttttctctgtttgatAACATTCTGGATATAACGTAAAGCCATGGGTTGTGCCATGTGCACGCAGTTGATGGATTTGTGGTGTTGGTCTAGCTCACAGAGAGGCCAGACATCAATGGACATGTCCTATATGCCGGAGGTCACTCAACAAGACTACCACAGACTGTCAGGTCTCCATTATACTTCCTCTTTCTCTGATGCGGAGGATTGCTGTGATGACATCACAACCACAAGCTCCTCATCCTCTTCTTCGGACTATCTCGGAATTGACTGTTGACCCTTGTTGTGCTTTTAGGTTTTTGTAGGTTCCTCAAATCTTGTGCCAAATTTTTTCCATTGTCTTTGGCTCCCAAGTCATCACTCAATGATACAGAACAATTATTAAGCCATGACTAAATTAAACCAGAGGCTCCTCcaagtaggtatcgctgcagcctggagacctccaagtgggagggattacaccgCAAGTGGGTTGGGTGACCttcaagtgggagggacttaaaccacaagtaggttgggtgtAGGTGGagtagatgctaataaaacacatcaaGGTTACACACGGTAACAcagcaggttactgtgaggttggatTAAGGGTAAGGGTATGTGTAGAGATTCATTAAGCACAATTTTGGAATCTGcgtcatgtacaagacattaaataaataaaaactccagaTTTGTACAGCTCACTTGGAGCTTGAAAGTCCACCCTTAtggagctcaagtcccacccCCTTCTTGGAGCTGGCTTCGACCTCCGTTTATACCCTTCTCGTTTCCTCTGGTCTTGGGTGTTTGAAAATGTTGTGTTATCATCAGGGGCAGAAACTTTATattgattttatattatattgatttttgtttgtcttttattaatttaaactgGTGTTTTTCTCATTTCTTTTGTCTGTTTTATCTTAATGCAATCTTTACTTTTTGAATTATTTGTTTCCTTAAAATGAATCCAcaactacaaataataaaaaaattaacaaaca

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0001708 cell fate specification biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0048880 sensory system development biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0048663 neuron fate commitment biological_process
GO:0048665 neuron fate specification biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0001654 eye development biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0007423 sensory organ development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0150063 visual system development biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061734 lncRNA upstream 49574 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00059092 lncRNA upstream 49614 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00059086 lncRNA upstream 399681 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059079 lncRNA upstream 446041 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059076 lncRNA upstream 446378 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00061439 lncRNA downstream 597150 33935619 ~ 33937420 (+) True XLOC_030228
TCONS_00061442 lncRNA downstream 954792 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061441 lncRNA downstream 954792 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061440 lncRNA downstream 954792 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061737 lncRNA downstream 955005 34293474 ~ 34294207 (+) False XLOC_030229
TCONS_00059097 mRNA upstream 1526 33301005 ~ 33330923 (+) True XLOC_030220
TCONS_00059096 mRNA upstream 37702 33289057 ~ 33294747 (+) True XLOC_030219
TCONS_00059095 mRNA upstream 40198 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059094 mRNA upstream 40730 33287611 ~ 33291719 (+) False XLOC_030219
TCONS_00059091 mRNA upstream 48731 33281105 ~ 33283718 (+) False XLOC_030218
TCONS_00059099 mRNA downstream 1293 33339762 ~ 33347993 (+) True XLOC_030222
TCONS_00059100 mRNA downstream 150391 33488860 ~ 33491935 (+) True XLOC_030223
TCONS_00059101 mRNA downstream 159784 33498253 ~ 33500331 (+) True XLOC_030224
TCONS_00059102 mRNA downstream 164639 33503108 ~ 33504967 (+) True XLOC_030225
TCONS_00059103 mRNA downstream 181474 33519943 ~ 33525677 (+) True XLOC_030226
TCONS_00059093 other upstream 49574 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059088 other upstream 338558 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059085 other upstream 399681 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059082 other upstream 445851 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059081 other upstream 446563 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059114 other downstream 1581926 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 2119765 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3167004 36505473 ~ 36506619 (+) True XLOC_030253
TCONS_00059140 other downstream 3260638 36599107 ~ 36609700 (+) False XLOC_030256
TCONS_00059142 other downstream 3260680 36599149 ~ 36605565 (+) True XLOC_030256

Expression Profile

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