RNA id: TCONS_00059099


Basic Information

Item Value
RNA id TCONS_00059099
length 996
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_030222
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33339762 ~ 33347993 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgccaagTATAATGAGGAATGGGAGGGCTTAACGGACTGGCTTCCCATATAAAACCTCCAAACACGACTATGCTACAAAGTTTACACAGAGAGATAGAGGCTCAAGATGCTCGGGAGCGACATACAGTTGTGCTTCATCTTCTACAGCACGCTTTTAATCTTGAAGATGTACATTATTGCCATCATCACGGGCCAAGTGAGACTTCGGAAAAAGGCGTTTGCTAACCCAGAGGACGCCGAGAGACACGGAGGTGTGCAGTTCTGCCGCACGGATCCATATGTGGAGCGCTGTAGGAGagcaCAGCAGAATGACATGGAGAACATTTTGCCCTTTTTATTTCTTGGAGCGGTCTACTCCATGACAAGCCCATCATATGCAGCAGCACAACTTCATTTCCTCATCTTCTTCCTGGGTCGAGTTCTTCACAGCGTTGCATATCTGCTGGCACTAAAAGCACCGACACGTTCATTGGCCTATGTCATCGCTCAGGTGCCTTGCATTTCAATGGCCATACAGATACTCATGGAAGTGGCCTCATTCGCATGACCCAGTCATATATTCAGCTCTGAGACTGGTGAAGACTATGATCTGGACTGCTGCTTTGGTGGACTTACAGCATCTCAACAGTAATAGAATTCACATTTAACTTTGAGATTAGACTTGATTGTTTATGACTGACAATAGCCCTCCTCTGAAACTGCTGCAGTCATTGCCCTCATTTATGTACTGGACACTACAGTTTGTTTTGCGTATTGCCAtcttgttttactattcaaatgAAGGTATTTTTACATGATTTTTTCCCTTAATTAGGTTGGCGTGtacttatatttatgtatttgatgATACAGACAAAATCTGAAAGTAGTGAGTTTTGAAAATGGCGTGGTCTTGAGCATTTATACTGCTAGTGCCATTGTTTAGACTGTTATAGGATGCTTTCCCACTTACAGCTCAGTTAATATGGTTTGTGTggtccagacaaaaaaaaaaa

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050220 prostaglandin-E synthase activity molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism

ZFIN:

id description
ZDB-GENE-050407-2 Enables prostaglandin-E synthase activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; pectoral fin; periderm; and splanchnocranium. Orthologous to human PTGES (prostaglandin E synthase).

Ensembl:

ensembl_id ENSDART00000026085

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061735 lncRNA upstream 1293 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00061736 lncRNA upstream 1293 33332548 ~ 33338469 (+) True XLOC_030221
TCONS_00059098 lncRNA upstream 1296 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00061734 lncRNA upstream 56887 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00059092 lncRNA upstream 56927 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061439 lncRNA downstream 587626 33935619 ~ 33937420 (+) True XLOC_030228
TCONS_00061442 lncRNA downstream 945268 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061441 lncRNA downstream 945268 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061440 lncRNA downstream 945268 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061737 lncRNA downstream 945481 34293474 ~ 34294207 (+) False XLOC_030229
TCONS_00059097 mRNA upstream 8839 33301005 ~ 33330923 (+) True XLOC_030220
TCONS_00059096 mRNA upstream 45015 33289057 ~ 33294747 (+) True XLOC_030219
TCONS_00059095 mRNA upstream 47511 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059094 mRNA upstream 48043 33287611 ~ 33291719 (+) False XLOC_030219
TCONS_00059091 mRNA upstream 56044 33281105 ~ 33283718 (+) False XLOC_030218
TCONS_00059100 mRNA downstream 140867 33488860 ~ 33491935 (+) True XLOC_030223
TCONS_00059101 mRNA downstream 150260 33498253 ~ 33500331 (+) True XLOC_030224
TCONS_00059102 mRNA downstream 155115 33503108 ~ 33504967 (+) True XLOC_030225
TCONS_00059103 mRNA downstream 171950 33519943 ~ 33525677 (+) True XLOC_030226
TCONS_00059104 mRNA downstream 263958 33611951 ~ 33668960 (+) True XLOC_030227
TCONS_00059093 other upstream 56887 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059088 other upstream 345871 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059085 other upstream 406994 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059082 other upstream 453164 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059081 other upstream 453876 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059114 other downstream 1572402 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 2110241 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3157480 36505473 ~ 36506619 (+) True XLOC_030253
TCONS_00059140 other downstream 3251114 36599107 ~ 36609700 (+) False XLOC_030256
TCONS_00059142 other downstream 3251156 36599149 ~ 36605565 (+) True XLOC_030256

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_07572558_07577420.mRNA True 836 mRNA 0.43 5 CI01000339 7572481 ~ 7577441 (+)