RNA id: TCONS_00059101


Basic Information

Item Value
RNA id TCONS_00059101
length 702
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_030224
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33498253 ~ 33500331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttataggtgAAAACTTAAAAATGGAAAGCAGCAAGATTATCTCAACTGAAAAAGCTACAGTCGTCATTCAAGTAAACCCACAGCTGACACAAAATACTTTCGTTAGTGATGATGGACAGGAGGGCAGAGGATCATATCACTATATGGCTCTTAAAGAATTTTTCAAGGCACAACCAAAGGCACTCGGgACTGTCCAGATAATGACAGGAGTGATAGTTTTCTTGTTTGGTATTGTACTCACCATCGATTTTGACTACAGATACCACGATCCACATTTGTCTGTAGCTAGTGGCATCACCTACTGGGGATCTCTTGTTTACATCAGTGCTGGATCTCTGTCTGTTGCTGCTCAAAATAAACTTCATGCATGTGTGGTGAAAGCATCTCTCATAATGAACGTGCTCAGTGCCATAACTGCAGCGGCTGCCATTACTCTGATGTCCATAGAGTTATTCGCTGGTGATAATTATCACTGCAACTACTCTGGCTGTGGAAATTTAATGGTAAATACAACGTATATTAAAATTTTAAGAGTTTTGTATAAGAATAAACTGGGAATCCTTGGAAATTTGCTGGTGTTCTCCATCCTTCAGTTTATCATCTCCATCTGTATCTCAGGATTTGCCTGCAAGGTCACCTGCAACATTGACTCTGCAGTGGTTAATGTGGCTTTAAATCAGGTAAATAATTTAGCAGGTGa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080829-10 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000140993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061735 lncRNA upstream 159784 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00061736 lncRNA upstream 159784 33332548 ~ 33338469 (+) True XLOC_030221
TCONS_00059098 lncRNA upstream 159787 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00061734 lncRNA upstream 215378 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00059092 lncRNA upstream 215418 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061439 lncRNA downstream 435288 33935619 ~ 33937420 (+) True XLOC_030228
TCONS_00061442 lncRNA downstream 792930 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061441 lncRNA downstream 792930 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061440 lncRNA downstream 792930 34293261 ~ 34294841 (+) False XLOC_030229
TCONS_00061737 lncRNA downstream 793143 34293474 ~ 34294207 (+) False XLOC_030229
TCONS_00059100 mRNA upstream 6318 33488860 ~ 33491935 (+) True XLOC_030223
TCONS_00059099 mRNA upstream 150260 33339762 ~ 33347993 (+) True XLOC_030222
TCONS_00059097 mRNA upstream 167330 33301005 ~ 33330923 (+) True XLOC_030220
TCONS_00059096 mRNA upstream 203506 33289057 ~ 33294747 (+) True XLOC_030219
TCONS_00059095 mRNA upstream 206002 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059102 mRNA downstream 2777 33503108 ~ 33504967 (+) True XLOC_030225
TCONS_00059103 mRNA downstream 19612 33519943 ~ 33525677 (+) True XLOC_030226
TCONS_00059104 mRNA downstream 111620 33611951 ~ 33668960 (+) True XLOC_030227
TCONS_00059105 mRNA downstream 907432 34407763 ~ 34542470 (+) False XLOC_030230
TCONS_00059106 mRNA downstream 907432 34407763 ~ 34542480 (+) True XLOC_030230
TCONS_00059093 other upstream 215378 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059088 other upstream 504362 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059085 other upstream 565485 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059082 other upstream 611655 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059081 other upstream 612367 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059114 other downstream 1420064 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 1957903 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3005142 36505473 ~ 36506619 (+) True XLOC_030253
TCONS_00059140 other downstream 3098776 36599107 ~ 36609700 (+) False XLOC_030256
TCONS_00059142 other downstream 3098818 36599149 ~ 36605565 (+) True XLOC_030256

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000350_01343443_01355860.mRNA False 1386 mRNA 0.39 10 CI01000350 1343102 ~ 1355885 (+)