CI01000339_07417547_07433615


Basic Information

Item Value
gene id CI01000339_07417547_07433615
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 7416918 ~ 7433802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_07417547_07433615.mRNA
GCATAAAAGAGGGTCGGTAATCCATGCGTCTTCTTCATGCATTTTATACGTCATATCTTATATGTCACAGTTGTTTATCCAGCATACGTGACCTCGCCTTAAGCTTTTATGCAGAGGAAAGGAGCTTGCTTGCCAGATAGATTCAAGATTGTAACCAAGCACAGACTACTCTGTGACATCACACATAATGGATTTTTTCTTACAAGATGTGACTACAATTTGAATTATTCATAACCTCCTCATTTTAGCAATACAAAGCACAGACAACTACAGACAACCAGTTGGTTAGAGAATGGAATAGAATTTATAATATTTAAAGCACACTGCATGTTAATGCACGGCAATGTGCATAAAACATTAGAGTGGATTTGTGCACACCTTTTGTCTCGTTAAAATAATGACATTTGATTATGCCTTGTGGGAATATAACATATTGAAGTGGTGGAAATATTCTTCTCGATATGATGTGAAAAATATGAGGGTCCCAGTATTATATGCTAATAGTTACTTGAACATTTTAAAAGTATAGCAGGGATGATATATCTTTTTCAGAGTAATCACCTTTTGTTTCACATACAGTATTGGTCTGAATAGTTCTTTAATTTTTCTTTCTCTCTCTCCTCAGAAAGATGGCGATGAAACTATTGGACCCCAACTCCACTATATCATCTCCATTTTTCTCCCCTGTGGAGAATGGCCACAACGTCTCAGTGAACCGTACCTCCTCTCGTCCATACCATTATCCAAACATCACCTATGTGGACTTCTATCTGCACGAGCCCTTGGTGTCTGCTATCTTCATTGTATCCTACCTCCTCATCTTTATTGTGTGCATGGTGGGAAATGGAGTGGTGTGCTTTATCGTGCTAAGGAGCAAGAACATGCGTACGGTCACCAATCTCTTCATTCTCAACCTGGCCATCAGTGACCTGTTGGTTGGCATCTTTTGCATGCCTACAACATTGGTGGACAACATCATCACGGTTAGCTGTTTAGCAAGTTTACAGACTAGCTTGGATTTCACCATTGCAAGATTACACTATTCTGGCTGCAGGCGAATGGATCTAATGAAGTTCATGCAGACTTCAGACAAAGCACTTCAGAGAGCTGGAACAGTACAAATTTCAGCCCTGTTCCTAGAGCCAATCAAACAAACCTCAGGCTGGCCTTTTGGCAGTTTGGTGTGCAAGTTGAGTGGGATGGTGCAGGGAATATCGGTATCCGCCTCGGTCTTCACTTTAGTGGCCATTGCTGTGGACAGATTCCGCTGCATTGTCTATCCCTTCAAACAGAAGCTCACTATCTCCACCTCCACCCTCATCATTGTCATCATCTGGGTTCTGGCCATCTCCATCATGTGTCCATCTGGTGTAATGCTACAGGTCACCAAAGAGCACAGGGTCTCCATCTTGCTAAGCGATGGCAACTCCACGCAACCCTTCTACTGGTGCCGTGAAAACTGGCCAAACCAGGAGATGCGCAAGATTTACACCACAGTCCTCTTCGCTAACATTTATTTGGCACCTCTGACTCTCATTGTCATTATGTATGCTCGGATTGGAATCACGCTCTTCAAAACATCAATGCCTGCCGCTGTGTGCCAAGTTGGGACCTCAGGCTCCGGTTCTGGCTCTGGAAAGCATGGCAGATATGAAAGTCGTCAACTGGTGTCTCGGAAAAAGAAGCGGGTCATTAAAATGTTGCTAGTGGTGGCCCTGCTCTTCATCCTGTCATGGTTGCCATTGTGGGCTCTCATGATGCTGAGCGACTACGCAAGCTTGAGTGAGCATCAGCATCGCGTCATTAATATCTATTTTTATCCTCTGGCTCACTGGCTGGCGTTCTGTAACAGCAGCGTCAATCCCATAGTCTATGGGTTTTTCAATGAGAACTTCCGTAAGGGTTTCAAGGCGGCCTTTAAGCTTCAGCTCTGCTCAGCCCTTTTAGGGAAGAGGAGAAGCTACTCTCACCGGCTGCAGGGGAATGCTGTATTACCTGCCACCTTGCCCATGACCAAGGAGTCTGTACTGGAGGCTGGGGGTCCCAGACAAGGACAAGGGCTCATCCAAGGGCTGGTGTCTGTGGGCAATGGGAAGGGTGAAAGAAGCCAGTCTTCAGGCAAGGAGAACATGAAAGAACAGGATCTGATCATGGAAGATCTGGAGAAGGTAATGTATGATTTATAGGTGCTTAATGATCTTCATGGAACCCATGGTCAAAGATACTGTGCACTCAGATGATTTTTCCCTTCTCACTGACTGTTTTACTGCTGGGAGGACACCATGAGTTCGTCTTTCATCTCTTTTCATCTCTTTCATCTTGTAGGCAAGATGTGCTCTGCCTTTTCTCTCATGAAATTTTAAATTTAAGACA

Function

NR:

description
Si:ch211-89m7.1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_07417547_07433615.mRNA True 2373 mRNA 0.44 5 7416918 7433802

Neighbor

gene id symbol gene type direction distance location
CI01000339_07306865_07312762 NA coding upstream 104098 7306650 ~ 7312820 (+)
CI01000339_07289908_07291636 RPL12 coding upstream 125282 7289908 ~ 7291636 (+)
CI01000339_07273820_07274266 NA coding upstream 142025 7273757 ~ 7274893 (+)
CI01000339_07260000_07270969 NA coding upstream 145852 7260000 ~ 7271066 (+)
CI01000339_07254028_07258117 CRAT, CRATA coding upstream 158286 7254028 ~ 7258632 (+)
CI01000339_07488905_07489450 NA coding downstream 55103 7488905 ~ 7489736 (+)
CI01000339_07523519_07525853 SURF1 coding downstream 89501 7523303 ~ 7525890 (+)
CI01000339_07533234_07536497 MED22 coding downstream 99432 7533234 ~ 7536733 (+)
CI01000339_07541292_07556434 USP20 coding downstream 107490 7541292 ~ 7556458 (+)
CI01000339_07572558_07577420 NA coding downstream 138679 7572481 ~ 7577441 (+)
G484286 NA non-coding upstream 36449 7380251 ~ 7380469 (+)
G484280 NA non-coding upstream 45275 7364238 ~ 7371643 (+)
G484279 NA non-coding upstream 45709 7363155 ~ 7371209 (+)
G484275 NA non-coding upstream 61636 7354686 ~ 7355282 (+)
G484271 NA non-coding upstream 106685 7309617 ~ 7310233 (+)
G484294 NA non-coding downstream 18116 7451918 ~ 7505331 (+)
G484297 NA non-coding downstream 61032 7494834 ~ 7502139 (+)
G484290 NA non-coding downstream 86356 7520158 ~ 7522039 (+)
G484292 NA non-coding downstream 95006 7528808 ~ 7532461 (+)
G484302 NA non-coding downstream 123033 7556835 ~ 7557145 (+)
G484172 NA other upstream 301459 7114583 ~ 7115459 (+)
G484139 NA other upstream 450772 6946386 ~ 6966146 (+)
G484134 NA other upstream 469438 6946793 ~ 6947480 (+)
CI01000339_06041909_06043927 ATP5L other upstream 1372884 6041817 ~ 6044034 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other upstream 1814657 5599544 ~ 5602261 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030217 npffr2b coding NC_007116.7 CM002889.2 33067283 ~ 33104366 (+)