G484297


Basic Information

Item Value
gene id G484297
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 7494834 ~ 7502139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU555710
ATCTCTTTGATGGTGGCTCTCTTCATGGGGTCCACCTGGAGCATGTGTTTCAGAAGGCTAATAACGGACGGGTTCAGGTACTGAGGCGTGAAGAAGATCCCATCGCAGATCTTCTTGAAGAGTGTTGGCACGTGGTCGTCATCAAACGGCAGCGTTCCGCACAACAGGGCATACAAAATCACTCCGCTGCTCCAGATGTCCACCTCAGGCCCGGCGTATAACCTTCCAGAGATTACTTCTGGAGCAGCATAATTAGGAGAGCCGCAACTCGTCCTTAAGAATTCTCCATCTGACATCATGTTTGACAAGCCAAAGTCTGCAATCTTGGCATTCATGTGCGCATCCAGCAGGACGTTCTCAGGCTTGAGGTCTCTGTGCACCACCATATGTCTGTGGCAGTAATCCACCCCTGAGATGATTTGCTGGAACAGACGCCTGCTCTCCTTCTCATCCAACTTTCCATTTTTACAGATGTAGTCGAAGAGTTCTCCTCCTGACACATATTCCATTACCATGAAGATGTCGGTTGGTGTGCTGATGACTTGGTAAAGTTTGATTATATGCGGGTGACGGAAGAGTTTGAGGTTCTGGATCTCGCGTCGAATCTTCCCCACCACATCCAGACTGCGAATCTTCTGCCGGTTTAGAATCTTTACCGCCACCTGGTGCTTGGTCAACTCATGCTGGCCAACTTTGACTTTTCCAAACGTTCCCACTCCTAGCGTGTCTCCAAGAATATAATGTCCGATTTTCACCCTGCCTTCATGTTTCTGCTTGTCCGTCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU555710 True 785 lncRNA 0.49 6 7494834 7502139

Neighbor

gene id symbol gene type direction distance location
CI01000339_07488905_07489450 NA coding upstream 5098 7488905 ~ 7489736 (+)
CI01000339_07417547_07433615 NA coding upstream 61032 7416918 ~ 7433802 (+)
CI01000339_07306865_07312762 NA coding upstream 182014 7306650 ~ 7312820 (+)
CI01000339_07289908_07291636 RPL12 coding upstream 203198 7289908 ~ 7291636 (+)
CI01000339_07273820_07274266 NA coding upstream 219941 7273757 ~ 7274893 (+)
CI01000339_07523519_07525853 SURF1 coding downstream 21164 7523303 ~ 7525890 (+)
CI01000339_07533234_07536497 MED22 coding downstream 31095 7533234 ~ 7536733 (+)
CI01000339_07541292_07556434 USP20 coding downstream 39153 7541292 ~ 7556458 (+)
CI01000339_07572558_07577420 NA coding downstream 70342 7572481 ~ 7577441 (+)
CI01000339_07682173_07704747 NA coding downstream 179979 7682118 ~ 7704905 (+)
G484286 NA non-coding upstream 114365 7380251 ~ 7380469 (+)
G484280 NA non-coding upstream 123191 7364238 ~ 7371643 (+)
G484279 NA non-coding upstream 123625 7363155 ~ 7371209 (+)
G484275 NA non-coding upstream 139552 7354686 ~ 7355282 (+)
G484271 NA non-coding upstream 184601 7309617 ~ 7310233 (+)
G484290 NA non-coding downstream 18019 7520158 ~ 7522039 (+)
G484292 NA non-coding downstream 26669 7528808 ~ 7532461 (+)
G484302 NA non-coding downstream 54696 7556835 ~ 7557145 (+)
G484299 NA non-coding downstream 55212 7557351 ~ 7559026 (+)
G484340 NA non-coding downstream 60178 7562317 ~ 7562618 (+)
G484172 NA other upstream 379375 7114583 ~ 7115459 (+)
G484139 NA other upstream 528688 6946386 ~ 6966146 (+)
G484134 NA other upstream 547354 6946793 ~ 6947480 (+)
CI01000339_06041909_06043927 ATP5L other upstream 1450800 6041817 ~ 6044034 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other upstream 1892573 5599544 ~ 5602261 (+)

Expression


Co-expression Network