LOC110485129 (LOC106591690)


Basic Information

Item Value
gene id LOC110485129
gene name LOC106591690
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 27768154 ~ 27788573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939731.1
GGCAACGCTGCcagcgtgacgtataatctaaTGGACGGTTCTTCAGAAACAGCTCGTCAACCACTTCGGTAGCTTGCTAACCAACATAGCCGAAAGATTCAAGTTATTTATACGCTTTCGGTATATATTAGCTACTCTGTTTTCGACACACTTCTGTGTCTAAACTTGTTAACCTATTTAATATTACGTTTTTTGTATTAGTCAGCTATAGTAGCTGGCTGGTTTAGTTAGCACTAGCCTAGTCGCTAAtaaagctagctaacatccccgaccatgagttcactCAACTACTCTCGTCCTGTTAAAGAAGAgggggtctgctggacggagaaagagggTCTGTGGCTGAACATTGttgtgaaagaggagaaggaagaggaggatgtcacggttaaacaagaagtagagggtgaggctgtgaaagtgaaagaagaggaagacgcgttcagagtgaaagaggaggacgatgttacagtaaaagaagaggagaaagaggaggatgcagtttttggagtgaaggaggaggaggagggggagatgactgtcacgttgaaggaggaagaggaggaggttggAGATCTGTTTAACACCAgagagatatTTAACTATcatggatcctctggggagcctcaacaaccttGTGATGCtgaagaggcagagaagagtctctccggATCAGAACAACTCAATAAACACCTGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagagaacacacacaggagagaaatcttacagctgtggtcaatgtgggaagagttttggtagATCTTGCCATCTTactcaacaccagagaacacacacaggagagaaaccatacagctgtggtcaatgtgggaagagttttggtcgATCTTGCCAtctgactcaacaccagagaacacacacaATGGCAAAGGAAGCGGAAAGAAAAGGACCCCTGTGCCATTATGCGGTGACCAGCCTGGCAAAGAACAACTTCAGGGTGGTCACCGTAAACATGTACAATCCGCACGTGAAGGATGAAGAagtgagggcctttctggggagatacATGGACAATGTCTCCTCAGCGAGgggaacACTCTACTATGCCCGTCAGCCCCCGTTCTGCAGGCGTTGTATGGCCTACGGCCATATCCTGGCCTCGTGCAGTGCCAAGAGGTGTCGATTTTGTGGGTCGGAAGAGCACGAGGCCAAGGAATGTGACGAGCCCAAGGCTTGCCACGGGTGTGGCTCAAGAGCACACCTGTGGCGTGATTGCCCGGCTCGTCACAGGTCATACGCGTCTGCAGCTGGGGGGGgagcgggggatggggggaggaaagaaaggacGCGTGCGGATTGCATGGATGGCACAGGGGAAAAGACGGCGCAGGAAGAAGATGGGAAGAAGGATGAGATGGCAAAGGAAGCGGAAAGAAAAGGACCCCTGTGCCATTATGCGGTGACCAGCCTGGCAAAGAACAACTTCAGGGTGGTCACCGTAAACATGTACAATCCGCACGTGAAGGATGAAGAaCATCAAGCAGATGTACCCGTGACTGAGGCAGATGTGTCCGTGACTGAGGTAGATGTGTCCGTGACTGAGGTAGATGTGTCCGTGGCTGAGGTAGATGAGCTCATGGCTGAGGCAGATGTTCCCATGACTGAGGCAGATGTGTCCATGGCTGAGGCAGATGTGCCCATGGCTTAG
>TU1322228
CGGGGATTGGTATAGCAAATATCGTAAGATTTTCATGGACTGAAAAGGAGATGGAACCTTGGGGCAGGGAAACTTTTGGAAGGACCATATTGATGGGATGCCTCAGGATAGAGGTGAAGGAAGTACTCTGCCTTCAAGGCAACCCAAATGAAAAGGGTTTTGATGTGACGTGATGTGACGTGATGATGTATTGAAGATGGCAAAGGAAGCGGAAAGAAAAGGACCCCTGTGCCATTATGCGGTGACCAGCCTGGCAAAGAACAACTTCAGGGTGGTCACCGTAAACATGTACAATCCGCACGTGAAGGATGAAGAagtgagggcctttctggggagatacATGGACAATGTCTCCTCAGCGAGgtacctcagggactccctgggtttctggaacgggaggagagggttccaggcgttactcagggagtccccgaagagtgtggatggctacctccatcctccggcgatgttctccctgggggctgacaggggaacACTCTACTATGCACGTCAGCCCCCGTTCTGCAGGCGTTGGATGGCCTATGGCCATATCCTGGCCTCGTGCAGCGCCAAGAAGTGTTGTTTTTGTGGGTCGGAAGAGCACGAGG
>TU1322229
ccatcctctggcgatgttctccctgggggctgacaggggaacACTCTACTATGCCCGTCAGCCCCCGTTCTGCAGGCGTTGTATGGCCTACGGCCATATCCTGGCCTCGTGCAGTGCCAAGAGGTGTCGATTTTGTGGGTCGGAAGAGCACGAGGCCAAGGAATGTGACGAGCCCAAGGCTTGCCACGGGTGTGGCTCAAGAGCACACCTGTGGCGTGATTGCCCGGCTCGTCACAGGTCATACGCGTCTGCAGCTGGGGGGGgagcgggggatggggggaggaaagaaaggacGCGTGCGGATTGCATGGATGGCACAGGGGAAAAGACGGCGCAGGAAGAAGATGGGAAGAAGGATGAGGTGGGAAGAAAGAGGCGAGGAGAAGAAAAGAatggaacagaaggagagaagaaaaaggggacggaagaaggtggaggagctgagaagagggagaaggggacagtggtacgagaaggagtggaagagggaacggggacagtgacggagaaggagggaggagtggaggtg
>TU1322230
ccatcctctggcgatgttctccctgggggctgacaggggaacACTCTACTATGCCCGTCAGCCCCCGTTCTGCAGGCGTTGTATGGCCTACGGCCATATCCTGGCCTCGTGCAGTGCCAAGAGGTGTCGATTTTGTGGGTCGGAAGAGCACGAGGCCAAGGAATGTGACGAGCCCAAGGCTTGCCACGGGTGTGGCTCAAGAGCACACCTGTGGCGTGATTGCCCGGCTCGTCACAGGTCATACGCGTCTGCAGCTGGGGGGGgagcgggggatggggggaggaaagaaaggacGCGTGCGGATTGCATGGATGGCACAGGGGAAAAGACGGCGCAGGAAGAAGATGGGAAGAAGGATGAGGTGGGAAGAAAGAGGCGAGGAGAAGAAAAGAatggaacagaaggagagaagaaaaaggggacggaagaaggtggaggagctgagaagagggagaaggggacagtggtacgagaaggagtggaagagggaacggggacagtgacggagaaggagggaggagtggaggtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939731.1 False 1746 mRNA 0.50 6 27768154 27788573
TU1322228 False 608 TUCP 0.53 2 27776119 27781975
TU1322229 False 529 TUCP 0.59 2 27776572 27782350
TU1322230 True 529 TUCP 0.59 2 27776572 27782350

Neighbor

gene id symbol gene type direction distance location
LOC118938453 NA coding upstream 43737 27722180 ~ 27724417 (+)
LOC118938440 NA coding upstream 137384 27258575 ~ 27630770 (+)
LOC118938450 LOC106604339 coding upstream 223461 27539872 ~ 27545029 (+)
LOC110487368 LOC106564416 coding upstream 229935 27439224 ~ 27538219 (+)
LOC118938246 LOC106595566 coding downstream 76267 27863508 ~ 27865760 (+)
LOC110487376 NA coding downstream 119212 27907785 ~ 27915756 (+)
LOC110485128 LOC106595049 coding downstream 126678 27915251 ~ 27943776 (+)
LOC118938251 NA coding downstream 155883 27944456 ~ 27950411 (+)
LOC110487397 LOC106590567 coding downstream 236404 28024977 ~ 28035081 (+)
G1158355 NA non-coding upstream 160843 27606348 ~ 27607311 (+)
G1159353 NA non-coding upstream 193467 27573444 ~ 27574687 (+)
LOC118938442 NA non-coding upstream 355277 27409528 ~ 27415373 (+)
G1158343 NA non-coding downstream 12087 27800660 ~ 27801773 (+)
G1158351 NA non-coding downstream 21520 27810093 ~ 27811034 (+)
G1158371 NA non-coding downstream 25809 27814382 ~ 27814985 (+)
G1159469 NA non-coding downstream 57551 27846124 ~ 27919990 (+)
G1158375 NA non-coding downstream 63061 27851634 ~ 27852794 (+)
LOC110485126 NA other upstream 476936 27285432 ~ 27291404 (+)
LOC110487383 LOC106564416 other upstream 598360 26977083 ~ 27174368 (+)
G1158612 LOC106586052 other upstream 1550760 26163799 ~ 26217394 (+)
G1158563 NA other upstream 1652290 26110496 ~ 26115864 (+)
LOC110516920 LOC106578598 other upstream 1896751 25813029 ~ 25872772 (+)
G1159631 NA other downstream 331092 28119665 ~ 28125638 (+)
G1159684 NA other downstream 463957 28252530 ~ 28257974 (+)
LOC110513252 NA other downstream 550412 28338501 ~ 28698821 (+)
LOC110487355 LOC106561190 other downstream 684103 28472333 ~ 28500669 (+)
LOC110487369 LOC106595056 coding upstream 277698 27493088 ~ 27498421 (+)
G1158342 NA other upstream 7478 27493154 ~ 27768641 (+)

Expression


Co-expression Network