LOC110486110 (LOC106607429)


Basic Information

Item Value
gene id LOC110486110
gene name LOC106607429
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31243865 ~ 31250082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557474.2
GATGCGTTTTATAGGTTATCCATTATTTTTCTAATGGGATTCCTATCTCCTAATGTATCTATTATCTCTGGTCTGTTTGAGCTAGCTAGCCACCCAATCAATGTCTATTATTATTCAGTTTTATTAATATAGCCAGCCTATCATACGCGTTGGACTTAGTTTCTTTTTAAAAACAAAACCATGAATACGATGATAAATCGGGGAAGTTTTCAGACCCAGTTAGTTTCCATTATGGAAATGCTAAGCAAAGCTGCTGTGGTTGAAATCGGTAAACTTGTCGATGAGTGCTCGGCGGTTCTCCGTTCTGAAATATCCCAACAACACATGAACGAGAACGAGGCATTAAAGAAGAAATGTTACCTGCTAGAGATTGAATTAAAGACGGTAAAACTGCACGAACGTAAAAGGGTCATTGCCAGCCGTTGTCAGAATGGAGTTCAGGTCTCGGGACAAATATTTACGCATCAAGCAACTGAGAACCGAGAAAAGCAGTCTGCCCCCGCCATAGAGGGTGTCTTTGGTAAGGACTGGTGCATGGACCTATGGAGAAATGGAGGCTCTATCCCTCAGGATAAAGAGACAATTGGATCGGTCATTTTGGGCGATGATGACGTCACTCAGGCAATAGACTTGGTGGACAATGAGCCCGAGTTGGTGTTTATCAAAGAAGAGCTGTTTGAGGATCAGCCAGTGGACCAGCAGAGGGGACATGCAAGCAACAGAAAAAGGAGTGTAGCAGTGGAGGATGCTCCagcagtagagagaacagttgCCAGTCAACTTCACCTATACCAGGGGGACTTGAACACATACCCTGCAGGCAGCCATCAGGTACAGCCTGACACAGAGCAGCCCACATCCGTTGAGAGCCTCATGGAAGACCCCACTCTGGCTGGTCTGGTTGACAACACACCAGAGCCTGGTCCTGACACAGCCGATGGAATGTACATGGACTATCCTCCCCACAACACATACGCACCAAGAAACCGGCCAAGCCTCCAGCAGGGAACTGGAAAAGACCTGAAGCAGCAGTTTGACTGTTTGTTTTGTGGGAAGAGCTTTGGTTATTTAAGCTACTTGAAAGTCCACATCAGACGCCACTCTGGAGAGAAACCGTTTGGCTGCACAGTTTGCGGGAAGCGCTTCGCTCAGAAGACGTACCTGAAGCTGCATCAGCGTACACACTCTGGAGAGAAACCCTACAGTTGCAcagaatgtgggaagagtttctctcaGAAGAGTTCGTTGAACGTCCACCTCCGGAGTCACACTggggagaagccttatagctgtgtcGACTGTGGGAAGAGCTACACCTATAAACACGGTTTTAACACACACCAATGTTTCAATTAAGGGATTAGGGAGTAGTCAATTTGTTTTTAATTTACATTTCAACCTTGTTTTGAAAACTGGCAACCGAAACATCTTTAACCTTATTGTAATCATGGTGGTTTGCAGTAGGTCAAGTTTGTTTTTAAACTGTTGCGCTactgtgtgccctaatgaacattaCCCAGCTGTTACTCTTCACTACATGGCAGAGAACTGTTCCATTCAAGTTTTCCCTCTGCGCCGTCCGTAGGATTGCACACACACTGCCTTCTTGTCACACAATTGGCAAGAGACTATGCCCCACTGTTAGATGAGATTTGAGTGACATTTTTGAACAGTGGTTGTCCTGATACCAGTTTGTGCTACTGTGAAGAATGCCAGTGTGGTAGACCGATCATGTAAACGTGTGCCAAATAATTCTGTCATGAATTATGAAATTAAAGTAATACATTTA
>XM_021557475.2
TGACAACATGTTTGTTGCGTCCATCTTCCGTTTACACCAAGGTGTTCGGAGACGTCTTCCAGCTGTTTTCCGTAATCAAGCGATGTAAACATGGACATTTGGCACTGTCAGAACCCTAACAATGTGAAGAAAAGCAGTCTGCCCCCGCCATAGAGGGTGTCTTTGGTAAGGACTGGTGCATGGACCTATGGAGAAATGGAGGCTCTATCCCTCAGGATAAAGAGACAATTGGATCGGTCATTTTGGGCGATGATGACGTCACTCAGGCAATAGACTTGGTGGACAATGAGCCCGAGTTGGTGTTTATCAAAGAAGAGCTGTTTGAGGATCAGCCAGTGGACCAGCAGAGGGGACATGCAAGCAACAGAAAAAGGAGTGTAGCAGTGGAGGATGCTCCagcagtagagagaacagttgCCAGTCAACTTCACCTATACCAGGGGGACTTGAACACATACCCTGCAGGCAGCCATCAGGTACAGCCTGACACAGAGCAGCCCACATCCGTTGAGAGCCTCATGGAAGACCCCACTCTGGCTGGTCTGGTTGACAACACACCAGAGCCTGGTCCTGACACAGCCGATGGAATGTACATGGACTATCCTCCCCACAACACATACGCACCAAGAAACCGGCCAAGCCTCCAGCAGGGAACTGGAAAAGACCTGAAGCAGCAGTTTGACTGTTTGTTTTGTGGGAAGAGCTTTGGTTATTTAAGCTACTTGAAAGTCCACATCAGACGCCACTCTGGAGAGAAACCGTTTGGCTGCACAGTTTGCGGGAAGCGCTTCGCTCAGAAGACGTACCTGAAGCTGCATCAGCGTACACACTCTGGAGAGAAACCCTACAGTTGCAcagaatgtgggaagagtttctctcaGAAGAGTTCGTTGAACGTCCACCTCCGGAGTCACACTggggagaagccttatagctgtgtcGACTGTGGGAAGAGCTACACCTATAAACACGGTTTTAACACACACCAATGTTTCAATTAAGGGATTAGGGAGTAGTCAATTTGTTTTTAATTTACATTTCAACCTTGTTTTGAAAACTGGCAACCGAAACATCTTTAACCTTATTGTAATCATGGTGGTTTGCAGTAGGTCAAGTTTGTTTTTAAACTGTTGCGCTactgtgtgccctaatgaacattaCCCAGCTGTTACTCTTCACTACATGGCAGAGAACTGTTCCATTCAAGTTTTCCCTCTGCGCCGTCCGTAGGATTGCACACACACTGCCTTCTTGTCACACAATTGGCAAGAGACTATGCCCCACTGTTAGATGAGATTTGAGTGACATTTTTGAACAGTGGTTGTCCTGATACCAGTTTGTGCTACTGTGAAGAATGCCAGTGTGGTAGACCGATCATGTAAACGTGTGCCAAATAATTCTGTCATGAATTATGAAATTAAAGTAATACATTTA

Function

NR:

description
zinc finger protein 205-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557474.2 False 1789 mRNA 0.45 4 31243865 31250082
XM_021557475.2 True 1434 mRNA 0.47 4 31244780 31250082

Neighbor

gene id symbol gene type direction distance location
LOC110486108 LOC106607428 coding upstream 738 31240900 ~ 31243127 (+)
LOC110486104 chchd5 coding upstream 124184 31113781 ~ 31119681 (+)
LOC110485141 LOC106600922 coding upstream 281546 30904798 ~ 30962319 (+)
LOC110486099 NA coding upstream 391261 30850580 ~ 30852604 (+)
LOC110486087 LOC106584892 coding upstream 645162 30579918 ~ 30598703 (+)
LOC110486114 NA coding downstream 17740 31267822 ~ 31270431 (+)
LOC110486119 LOC106600898 coding downstream 159044 31409126 ~ 31442138 (+)
LOC110486123 LOC106607440 coding downstream 239735 31489817 ~ 31513332 (+)
LOC110486128 LOC106607447 coding downstream 392300 31642382 ~ 31649841 (+)
LOC110486130 LOC106607449 coding downstream 416158 31666240 ~ 31673890 (+)
G1163962 NA non-coding upstream 95199 31148280 ~ 31148666 (+)
G1163854 NA non-coding upstream 158534 30985962 ~ 31085331 (+)
G1163914 NA non-coding upstream 167354 31075458 ~ 31076511 (+)
G1163814 NA non-coding upstream 345233 30898145 ~ 30898632 (+)
G1164069 NA non-coding downstream 78670 31328752 ~ 31338410 (+)
G1164055 NA non-coding downstream 80975 31331057 ~ 31335655 (+)
G1164076 NA non-coding downstream 105113 31355195 ~ 31357298 (+)
G1164119 NA non-coding downstream 187223 31437305 ~ 31496657 (+)
G1164096 NA non-coding downstream 193192 31443274 ~ 31444634 (+)
G1162753 NA other upstream 1412569 29830754 ~ 29831296 (+)
G1162364 NA other upstream 1748963 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 1872918 29266618 ~ 29370947 (+)
G1161908 NA other upstream 1944209 29298758 ~ 29299656 (+)
LOC110486134 LOC106600876 other downstream 751669 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 1465174 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1979031 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1989871 33239953 ~ 33249208 (+)
G1166779 NA other downstream 2540558 33790640 ~ 33803665 (+)

Expression


Co-expression Network