G1164096


Basic Information

Item Value
gene id G1164096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31443274 ~ 31444634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1327580
TTCTTGAggcatttttatattttattttattttgttctttCACAGTTTCATCTTTTGGTGCGTTTTTACAACAGCtcattaccaaaggagagagggacggagggatggggaggaaaggaaaggaggagagcagtGCCAGAAAGttgaaagagagatagaaagagacagaaacaagggacagagaaagagaaagagtgggaggagagagaacaagggggATGAAGTAAAATCAACTCAAAGGAGATGTGACTTTCTCTCATtttgaaatatctacattattattttAACTTGAGGTTATTGGCCTTCCAGGCGGTCTGATAACTatacacaaacagaaacacataCGTTTGTATAAAAAGGAAAAAATAAATAGGATGGGGTTGTGGgtgggagtgggggagaggggtaAGTTAGCGGGGTGGGGGCGGAAGCCACGACACCCTTCCTCCAGTGCAGTAGTAGCCGTGCGCTTGAGTGGGAGAGAGCTGGGTGTCAGTGAGGGCAGGTGGAGGGATGAGGTGGGGGAGGAAGGGGCACGTGTGAGGGTCGGCTGCAGACTGGAAGAGGGGGAGTATCGGGGCTGGGTGGTGGAGCGCTAGTCGGTTTAGGAAGGTGTCTATTACTCGTGCACCAGGGCAACGAACTCTGAAAGAGAGCAAGAAGAGACAAGAGGTTAGAGCACTCTGTAGACTCTGTGGAAAATCTGATCACACTATGATGATACAGGTCCCTGCCGTCTGAGGCAAATCCCTTCAGTACGAACCTATGGGCAAcagggagagggcagagagacttGAGACCAGACAGTACAACTACTAGGAATGCTCTGGTGCCTAAACAGTTAAccatgagtgtttgtgtgtgtatataggatGGGAATGCATGTCCATGTGGTCACTGGTCGGTCACCATGCACTGTATATTGTTTAATAAATCACGGAGTGTGTAGTCAGTCAAAGTGTtgatgtgtttctctctctgtctgtgtctttctctgtgtgtgtctccctgtgtgtgtctccctgtgtgtgtgtgcgtctcttaCTTgagctcctcctcctctatgaaTCCGCTGGCGTCAGCGTCCAGCACCAGGAAGGCTTTCTTCACATCCTCAGCTGACTTGGCCTTCAGACCCACCATCTCAAAGAATTTCTTATGGTCAAAAGAGTCAGCCGCTGCAtggcataacacacacacagtttaagtgaacacacacacacagagtacaaaCACAAAtggaggc

Function

NR:

description
PREDICTED: parvalbumin-7-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1327580 True 1246 lncRNA 0.48 2 31443274 31444634

Neighbor

gene id symbol gene type direction distance location
LOC110486119 LOC106600898 coding upstream 1136 31409126 ~ 31442138 (+)
LOC110486114 NA coding upstream 172843 31267822 ~ 31270431 (+)
LOC110486110 LOC106607429 coding upstream 193192 31243865 ~ 31250082 (+)
LOC110486108 LOC106607428 coding upstream 200147 31240900 ~ 31243127 (+)
LOC110486104 chchd5 coding upstream 323593 31113781 ~ 31119681 (+)
LOC110486123 LOC106607440 coding downstream 45183 31489817 ~ 31513332 (+)
LOC110486128 LOC106607447 coding downstream 197748 31642382 ~ 31649841 (+)
LOC110486130 LOC106607449 coding downstream 221606 31666240 ~ 31673890 (+)
LOC110486131 LOC105029658 coding downstream 239840 31684474 ~ 31690205 (+)
LOC110487528 tex33 coding downstream 246899 31691533 ~ 31692268 (+)
G1164076 NA non-coding upstream 85976 31355195 ~ 31357298 (+)
G1164069 NA non-coding upstream 104864 31328752 ~ 31338410 (+)
G1164055 NA non-coding upstream 107619 31331057 ~ 31335655 (+)
G1163989 NA non-coding upstream 188486 31189977 ~ 31254788 (+)
G1163962 NA non-coding upstream 294608 31148280 ~ 31148666 (+)
G1164121 NA non-coding downstream 863 31445497 ~ 31482024 (+)
G1164530 NA non-coding downstream 78965 31523599 ~ 31524049 (+)
G1164537 NA non-coding downstream 81645 31526279 ~ 31526494 (+)
G1164540 NA non-coding downstream 86385 31531019 ~ 31533656 (+)
G1162753 NA other upstream 1611978 29830754 ~ 29831296 (+)
G1162364 NA other upstream 1948372 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 2072327 29266618 ~ 29370947 (+)
G1161908 NA other upstream 2143618 29298758 ~ 29299656 (+)
LOC110486134 LOC106600876 other downstream 557117 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 1270622 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1784479 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1795319 33239953 ~ 33249208 (+)
G1166779 NA other downstream 2346006 33790640 ~ 33803665 (+)

Expression


Co-expression Network