LOC100136718 (mlc-2)


Basic Information

Item Value
gene id LOC100136718
gene name mlc-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49295336 ~ 49299251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124679.1
GCGGCTTCACATCAGTCTCTTCTCTTGTTGACCATCCAAACCTCCATACACACCGTCTCGAGATGGCACCCAAGAAGGCCAAGAGGAGGGGAGCAGCAGCAGAGGGCGGTTCCTCCAACGTGTTCTCCATGTTTGAGCAGAGCCAGATCCAGGAGTACAAGGAGGCTTTCACAATCATTGACCAGAACAGAGACGGTATCATCAGCAAGGATGACTTAAGGGACGTGCTGGCCTCAATGGGCCAGTTGAATGTGAAGAATGAGGAGCTGGAAGCCATGGTCAAGGAGGCCAGCGGCCCCATCAACTTCACCGTCTTCCTCACCATGTTCGGAGAGAAGCTCAAGGGGGCTGATCCCGAGGATGTCATCGTTAGTGCTTTCAAGGTCTTGGACCCCGATGCTACCGGTTTCATCAAGAAGGACTTccttcagGAGCTCCTGACCACTCAGTGCGACAGGTTCTCTGCAGAGGAGatGAAGAACCTGTGGGCTGCCTTCCCCCCAGATGTGGCCGGCAACGTAGACTACAAGCAAATCTGCTACGTCATCACACacggagaggagaaggaggagtaaTGAAACAGACAGAAGAAAAGAAAACAGCCTCCCTTGTCATTCTACCTTcctgctcctctcttcttccttctaTTTTCTCATACCTTCATTCTCTTTATGTGTACTCATGtgctctgtctctcactcacacaaatTCTCTAAAAGACTTGTCTCCACTCAAGACATTTGTGTGAGAGCGGGTGCTCatgggttgtctatgtttgttCGTGGGGATATGGGATTATTTTCAATAAAAATGATCTTTTAa

Function

symbol description
mlc-2 Predicted to enable calcium ion binding activity. Involved in several processes, including nematode larval development; regulation of muscle contraction; and regulation of pharyngeal pumping. Predicted to be part of myosin complex. Is expressed in body wall musculature; pharynx; and vulval muscle. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 10. Orthologous to several human genes including MYL10 (myosin light chain 10); MYL2 (myosin light chain 2); and MYL5 (myosin light chain 5).

NR:

description
myosin regulatory light chain 2, skeletal muscle isoform type 2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12758 MYLPF; fast skeletal myosin light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124679.1 True 822 mRNA 0.50 7 49295336 49299251

Neighbor

gene id symbol gene type direction distance location
LOC110486677 LOC106601591 coding upstream 11220 49281106 ~ 49284116 (+)
LOC110486678 NA coding upstream 28569 49263529 ~ 49266771 (+)
LOC110486670 LOC106606891 coding upstream 81917 49210465 ~ 49213419 (+)
LOC110486671 LOC100335037 coding upstream 92643 49198846 ~ 49202693 (+)
LOC118936277 prf1 coding upstream 157085 49134951 ~ 49138251 (+)
LOC110486684 LOC106601519 coding downstream 70987 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 223279 49522530 ~ 49530733 (+)
LOC110486693 rundc3a coding downstream 233769 49533020 ~ 49551503 (+)
LOC110486691 LOC106601608 coding downstream 252471 49551722 ~ 49557177 (+)
LOC110486695 LOC106601598 coding downstream 259537 49558788 ~ 49567825 (+)
G1182627 NA non-coding upstream 145412 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 241319 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 248651 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 250559 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 261951 49033108 ~ 49033385 (+)
G1182611 NA non-coding downstream 950 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 10849 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 20552 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 24687 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 51144 49350395 ~ 49352361 (+)
G1182629 NA other upstream 176639 49114975 ~ 49118697 (+)
G1182595 NA other upstream 230194 49063785 ~ 49065142 (+)
G1182742 NA other downstream 120319 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 281075 49580324 ~ 49584562 (+)
G1183819 NA other downstream 532970 49832221 ~ 49835014 (+)
G1183875 NA other downstream 583570 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1686562 50985813 ~ 50986566 (+)

Expression


Co-expression Network