XLOC_003034 (gpat4)


Basic Information

Item Value
gene id XLOC_003034
gene name gpat4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41362390 ~ 41400049 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005560
GGATAGTTGTCCATCGTTTCAGGCATAAATGATCATTTTCCCATATATGCCCATGAAGTCCATGTTTCAGCGCAGGCTTCAGAAATTGAGGCACTCTAGAGGAGTCCAGCAGTCTGTGTTTAGGTAATCTTGTCACTTTTAAAGCATTCTACATTTCGGTCAAGATGGAGTCGTACCTTTTCCCCTTcgacagtctgatatgcatgctcCTGGGCATCTCCTTAACTGTATGGTGCACCCTTCTTCTGGTCTTCATCATCGTTCCTGCGATCCTCGGCGTGTCCTTCGGCATTCGCAGACTCTATATGATGTCCCTGATCAAGCTTTTTGAGTGGGCGACTTTAAGAATGGAGCGAGGAGCCAGAGAGAAGAATCAGCATCTCTACAAACCCTACAGCAATgGGATCATTGCTAAAGAACCAGCGTCTCTGGAGCAGGAGATCCAGGAGATGCGGCGGGGCGGTGCCGAGCCCGAGTTTGACATGTCTGACATCTTTCATTTCTGTCGGCGCGGCGTGGAGAGCATCGTAGATGATGAAGTGACTAAACGCTTTACAGCCGAGGAGCTGGAGTCCTGGAATCTACTGACCCGGAGCAACTATAACTTCCACCACATCAGCACCAGGCTCACGGCGCTCTGGGGGGTCGGCGTCCTCATCCGCTATGGCTTTCTGCTGCCGCTCAGGGTCACTCTTGCCTTCACCGGTGTGGGTCTTCTAGTGGTTCTGACGTCAATCGTTGGCCTGTTTCCGAATGGGAGGATGAAGAATTATCTCAGTGATAAGGTTCATCTGATGTGTTACCGGATCTGTGTAAGAGCCCTCACGGCCATCATCACCTACCATGACAGTGAGAATAAACCCAAGAATGGAGGAATCTGTGTGGCCAATCACACATCACCCATCGACGTCATCATCCTGGCCAGTGACGGCTGCTATGCAATGGTCGGTCAGGTTCACGGTGGTCTGATGGGGGTCATTCAGAGGGCGATGGTAAAAGCCTGTCCACACATCTGGTTCGAGAGGTCTGAAGTAAAGGACCGACATCTAGTGGCCAAACGATTAAGTGACCATGTTGCTGACGAAAGCAAACTGCCTATCCTCATATTTCCAGAAGGAACCTGCATCAACAACACTTCGGTCATGATGTTCAAGAAGGGCAGCTTTGAGATCGGCTGTACGGTTTACCCAGTGGCCATAAAGTATGATCCTCGTTTTGGTGACGCGTTCTGGAACAGCAGTAAGTTTGGGATGGTGAATTACCTGTTACACATGATGAGCAGCTGGGCCATTGTGTGCAGCGTCTGGTACCTTCCACCAATGAGCCGGATGGAAGGTGAGGATGCTGTGCAGTTCGCCAACAGAGTCAAAGCAGCCATTGCACGAAAGGGAGGACTAGCAGACCTGTTATGGGACGGCGGGTTGAAGCGAGGGAAAGTCAAAGAGGTCTTCAAAGAGGAGCAGCAGAAGCTGTACAGTAAAGTGCTGGTGGGCAGCAGTGAAGACCGCAGTCGATCCTGAAGAGCCGCAGGGGTGTGTTTGACTTGACTGGTGTTGCTCCTCTGCGAGAACCCAGACCCTCAGCAGAGGCAGAGCGGCTGGCCCCTTCCTAAACCTGCAGACACAACCGATGATCTGGAGAGCTGCGCTGGAAAACAGGAGCTTCGCATTACTGCACGACTGACCGGCTCTGGGGCTGAGATTTACACTGACATCATACTTGAGTgattgttttcttgtttgtttgttatggtTTTGAATATTTGTGCTCTGTTACTGTAATGCATGATGTCCCGGGAGAGATGGTGGAGGGTTTGAAGTGATTTATTTAAGCTTGtgaagtaataatattaataataataagggatGTTGTGCGTAGAAGTGTAGTGTGGGTAGAACCATCAAGAAAAACCGTGTCTGTCGAGTGTGTTTCTGCTCAGCGTTTCAGCTCCTCATCATGACGGCCTCTCTGGTGTGCTGTGctctttttaataaaatgattttttttttt
>TCONS_00005561
GCATCCGTACCTCGCGCCGCTGCTGATGCGCTTAAAGTAGTTGCATAACAACAACAGTAGCGTCTCACGATGCTCCAATATCCAATGTGTGTTATATTAAGAAGGCAAATGGTCGTTTAAACCCCATCTTCAGGCAACAGataTGTCAGAAATGGCTGTGGACCTTGATGTGAGACTGTGATAGGCCACTGAAGCAGATGGAATCATTCGAAGGAAATCCTGGACAATAACacatatttattacataaaacactccagttatatttatttatttatttatttatttttcactaacCCTCATGTGTCATACTGGCACGTCTGTAGCATCATAATCTGTTAACTTAATGGATAGTTGTCCATCGTTTCAGGCATAAATGATCATTTTCCCATATATGCCCATGAAGTCCATGTTTCAGCGCAGGCTTCAGAAATTGAGGCACTCTAGAGGAGTCCAGCAGTCTGTGTTTAGGTAATCTTGTCACTTTTAAAGCATTCTACATTTCGGTCAAGATGGAGTCGTACCTTTTCCCCTTcgacagtctgatatgcatgctcCTGGGCATCTCCTTAACTGTATGGTGCACCCTTCTTCTGGTCTTCATCATCGTTCCTGCGATCCTCGGCGTGTCCTTCGGCATTCGCAGACTCTATATGATGTCCCTGATCAAGCTTTTTGAGTGGGCGACTTTAAGAATGGAGCGAGGAGCCAGAGAGAAGAATCAGCATCTCTACAAACCCTACAGCAATgGGATCATTGCTAAAGAACCAGCGTCTCTGGAGCAGGAGATCCAGGAGATGCGGCGGGGCGGTGCCGAGCCCGAGTTTGACATGTCTGACATCTTTCATTTCTGTCGGCGCGGCGTGGAGAGCATCGTAGATGATGAAGTGACTAAACGCTTTACAGCCGAGGAGCTGGAGTCCTGGAATCTACTGACCCGGAGCAACTATAACTTCCACCACATCAGCACCAGGCTCACGGCGCTCTGGGGGGTCGGCGTCCTCATCCGCTATGGCTTTCTGCTGCCGCTCAGGGTCACTCTTGCCTTCACCGGTGTGGGTCTTCTAGTGGTTCTGACGTCAATCGTTGGCCTGTTTCCGAATGGGAGGATGAAGAATTATCTCAGTGATAAGGTTCATCTGATGTGTTACCGGATCTGTGTAAGAGCCCTCACGGCCATCATCACCTACCATGACAGTGAGAATAAACCCAAGAATGGAGGAATCTGTGTGGCCAATCACACATCACCCATCGACGTCATCATCCTGGCCAGTGACGGCTGCTATGCAATGGTCGGTCAGGTTCACGGTGGTCTGATGGGGGTCATTCAGAGGGCGATGGTAAAAGCCTGTCCACACATCTGGTTCGAGAGGTCTGAAGTAAAGGACCGACATCTAGTGGCCAAACGATTAAGTGACCATGTTGCTGACGAAAGCAAACTGCCTATCCTCATATTTCCAGAAGGAACCTGCATCAACAACACTTCGGTCATGATGTTCAAGAAGGGCAGCTTTGAGATCGGCTGTACGGTTTACCCAGTGGCCATAAAGTATGATCCTCGTTTTGGTGACGCGTTCTGGAACAGCAGTAAGTTTGGGATGGTGAATTACCTGTTACACATGATGAGCAGCTGGGCCATTGTGTGCAGCGTCTGGTACCTTCCACCAATGAGCCGGATGGAAGGTGAGGATGCTGTGCAGTTCGCCAACAGAGTCAAAGCAGCCATTGCACGAAAGGGAGGACTAGCAGACCTGTTATGGGACGGCGGGTTGAAGCGAGGGAAAGTCAAAGAGGTCTTCAAAGAGGAGCAGCAGAAGCTGTACAGTAAAGTGCTGGTGGGCAGCAGTGAAGACCGCAGTCGATCCTGAAGAGCCGCAGGGGTGTGTTTGACTTGACTGGTGTTGCTCCTCTGCGAGAACCCAGACCCTCAGCAGAGGCAGAGCGGCTGGCCCCTTCCTAAACCTGCAGACACAACCGATGATCTGGAGAGCTGCGCTGGAAAACAGGAGCTTCGCATTACTGCACGACTGACCGGCTCTGGGGCTGAGATTTACACTGACATCATACTTGAGTgattgttttcttgtttgtttgttatggtTTTGAATATTTGTGCTCTGTTACTGTAATGCATGATGTCCCGGGAGAGATGGTGGAGGGTTTGAAGTGATTTATTTAAGCTTGtgaagtaataatattaataataataagggatGTTGTGCGTAGAAGTGTAGTGTGGGTAGAACCATCAAGAAAAACCGTGTCTGTCGAGTGTGTTTCTGCTCAGCGTTTCAGCTCCTCATCATGACGGCCTCTCTGGTGTGCTGTGctctttttaataaaatgattttttttttt
>TCONS_00005562
AACAACACTTCGGTCATGATGTTCAAGAAGGGCAGCTTTGAGATCGGCTGTACGGTTTACCCAGTGGCCATAAAGTATGATCCTCGTTTTGGTGACGCGTTCTGGAACAGCAGTAAGTTTGGGATGGTGAATTACCTGTTACACATGATGAGCAGCTGGGCCATTGTGTGCAGCGTCTGGTACCTTCCACCAATGAGCCGGATGgtgagtattattattaaaaatattattatttatagtattatatacaataggtttgtgtttttaagtaAGGGTGCTCTACATAATTCAAAGGTGacagcaaattaaattaatattacaaaaCCTATTTCAAATAGATGCCGATTTTCTTaggattatgattattatgttaaTGAATATTATCATACTTTTGTTAATAAATAGCGCATTACAATAATCAGATGTGattgtaaa

Function

symbol description
gpat4 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human GPAT4 (glycerol-3-phosphate acyltransferase 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-5102 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human GPAT4 (glycerol-3-phosphate acyltransferase 4).

Ensembl:

ensembl_id ENSDARG00000019897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005560 False 2010 mRNA 0.50 12 41362390 41397663
TCONS_00005561 False 2356 mRNA 0.48 13 41362390 41400049
TCONS_00005562 True 435 lncRNA 0.35 2 41368108 41368637

Neighbor

gene id symbol gene type direction distance location
XLOC_003033 rab11fip1b coding downstream 9782 41318583 ~ 41352608 (-)
XLOC_003032 brf2 coding downstream 59481 41279007 ~ 41302909 (-)
XLOC_003031 aak1b coding downstream 205255 41060739 ~ 41157135 (-)
XLOC_003030 npffr1l1 coding downstream 394295 40951697 ~ 40968095 (-)
XLOC_003029 CU929265.1 coding downstream 459153 40903121 ~ 40903237 (-)
XLOC_003035 cabp1b coding upstream 9206 41409255 ~ 41450454 (-)
XLOC_003036 ggt1b coding upstream 224662 41624711 ~ 41664427 (-)
XLOC_003037 kdm2bb coding upstream 426282 41826331 ~ 41907213 (-)
XLOC_003038 morn3 coding upstream 526839 41926888 ~ 41940302 (-)
XLOC_003039 rhof coding upstream 569379 41969428 ~ 41980797 (-)
XLOC_003028 NA non-coding downstream 505293 40851137 ~ 40857097 (-)
XLOC_003024 BX001050.1 non-coding downstream 620943 40741330 ~ 40741447 (-)
XLOC_003023 NA non-coding downstream 740435 40620981 ~ 40621955 (-)
XLOC_003015 CR396590.4 non-coding downstream 824343 40537440 ~ 40538047 (-)
XLOC_003040 NA non-coding upstream 582860 41982909 ~ 41986595 (-)
XLOC_003047 NA non-coding upstream 913590 42313639 ~ 42355104 (-)
XLOC_003048 NA non-coding upstream 1070567 42470616 ~ 42473939 (-)
XLOC_003053 FP236542.2 non-coding upstream 1399066 42799115 ~ 42870149 (-)
XLOC_003057 CU326366.3 non-coding upstream 1511884 42911933 ~ 42912047 (-)

Expression


Co-expression Network