RNA id: TCONS_00005560


Basic Information

Item Value
RNA id TCONS_00005560
length 2010
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_003034
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41362390 ~ 41400049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATAGTTGTCCATCGTTTCAGGCATAAATGATCATTTTCCCATATATGCCCATGAAGTCCATGTTTCAGCGCAGGCTTCAGAAATTGAGGCACTCTAGAGGAGTCCAGCAGTCTGTGTTTAGGTAATCTTGTCACTTTTAAAGCATTCTACATTTCGGTCAAGATGGAGTCGTACCTTTTCCCCTTcgacagtctgatatgcatgctcCTGGGCATCTCCTTAACTGTATGGTGCACCCTTCTTCTGGTCTTCATCATCGTTCCTGCGATCCTCGGCGTGTCCTTCGGCATTCGCAGACTCTATATGATGTCCCTGATCAAGCTTTTTGAGTGGGCGACTTTAAGAATGGAGCGAGGAGCCAGAGAGAAGAATCAGCATCTCTACAAACCCTACAGCAATgGGATCATTGCTAAAGAACCAGCGTCTCTGGAGCAGGAGATCCAGGAGATGCGGCGGGGCGGTGCCGAGCCCGAGTTTGACATGTCTGACATCTTTCATTTCTGTCGGCGCGGCGTGGAGAGCATCGTAGATGATGAAGTGACTAAACGCTTTACAGCCGAGGAGCTGGAGTCCTGGAATCTACTGACCCGGAGCAACTATAACTTCCACCACATCAGCACCAGGCTCACGGCGCTCTGGGGGGTCGGCGTCCTCATCCGCTATGGCTTTCTGCTGCCGCTCAGGGTCACTCTTGCCTTCACCGGTGTGGGTCTTCTAGTGGTTCTGACGTCAATCGTTGGCCTGTTTCCGAATGGGAGGATGAAGAATTATCTCAGTGATAAGGTTCATCTGATGTGTTACCGGATCTGTGTAAGAGCCCTCACGGCCATCATCACCTACCATGACAGTGAGAATAAACCCAAGAATGGAGGAATCTGTGTGGCCAATCACACATCACCCATCGACGTCATCATCCTGGCCAGTGACGGCTGCTATGCAATGGTCGGTCAGGTTCACGGTGGTCTGATGGGGGTCATTCAGAGGGCGATGGTAAAAGCCTGTCCACACATCTGGTTCGAGAGGTCTGAAGTAAAGGACCGACATCTAGTGGCCAAACGATTAAGTGACCATGTTGCTGACGAAAGCAAACTGCCTATCCTCATATTTCCAGAAGGAACCTGCATCAACAACACTTCGGTCATGATGTTCAAGAAGGGCAGCTTTGAGATCGGCTGTACGGTTTACCCAGTGGCCATAAAGTATGATCCTCGTTTTGGTGACGCGTTCTGGAACAGCAGTAAGTTTGGGATGGTGAATTACCTGTTACACATGATGAGCAGCTGGGCCATTGTGTGCAGCGTCTGGTACCTTCCACCAATGAGCCGGATGGAAGGTGAGGATGCTGTGCAGTTCGCCAACAGAGTCAAAGCAGCCATTGCACGAAAGGGAGGACTAGCAGACCTGTTATGGGACGGCGGGTTGAAGCGAGGGAAAGTCAAAGAGGTCTTCAAAGAGGAGCAGCAGAAGCTGTACAGTAAAGTGCTGGTGGGCAGCAGTGAAGACCGCAGTCGATCCTGAAGAGCCGCAGGGGTGTGTTTGACTTGACTGGTGTTGCTCCTCTGCGAGAACCCAGACCCTCAGCAGAGGCAGAGCGGCTGGCCCCTTCCTAAACCTGCAGACACAACCGATGATCTGGAGAGCTGCGCTGGAAAACAGGAGCTTCGCATTACTGCACGACTGACCGGCTCTGGGGCTGAGATTTACACTGACATCATACTTGAGTgattgttttcttgtttgtttgttatggtTTTGAATATTTGTGCTCTGTTACTGTAATGCATGATGTCCCGGGAGAGATGGTGGAGGGTTTGAAGTGATTTATTTAAGCTTGtgaagtaataatattaataataataagggatGTTGTGCGTAGAAGTGTAGTGTGGGTAGAACCATCAAGAAAAACCGTGTCTGTCGAGTGTGTTTCTGCTCAGCGTTTCAGCTCCTCATCATGACGGCCTCTCTGGTGTGCTGTGctctttttaataaaatgattttttttttt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-5102 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human GPAT4 (glycerol-3-phosphate acyltransferase 4).

Ensembl:

ensembl_id ENSDART00000158038

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006123 lncRNA downstream 505293 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 740435 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 863181 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 871753 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 2272302 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00006124 lncRNA upstream 585246 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 585246 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 585246 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 585246 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 585246 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005559 mRNA downstream 9782 41352153 ~ 41352608 (-) True XLOC_003033
TCONS_00005558 mRNA downstream 9888 41318583 ~ 41352502 (-) False XLOC_003033
TCONS_00005555 mRNA downstream 59481 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005554 mRNA downstream 59481 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005553 mRNA downstream 59481 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005563 mRNA upstream 11592 41409255 ~ 41450367 (-) False XLOC_003035
TCONS_00005564 mRNA upstream 11601 41409264 ~ 41450454 (-) True XLOC_003035
TCONS_00005565 mRNA upstream 227048 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005566 mRNA upstream 428668 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA upstream 431935 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005547 other downstream 459153 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 620943 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 824343 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 841290 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 844792 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 572228 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 713909 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1514270 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1595183 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 2138297 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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