Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005553 |
| length | 2275 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | XLOC_003032 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 41279007 ~ 41302909 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051123 | RNA polymerase II preinitiation complex assembly | biological_process |
| GO:0001174 | transcriptional start site selection at RNA polymerase II promoter | biological_process |
| GO:0006352 | DNA-templated transcription, initiation | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006359 | regulation of transcription by RNA polymerase III | biological_process |
| GO:0070897 | transcription preinitiation complex assembly | biological_process |
| GO:0034599 | cellular response to oxidative stress | biological_process |
| GO:0000126 | transcription factor TFIIIB complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0097550 | transcription preinitiation complex | cellular_component |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0017025 | TBP-class protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | molecular_function |
| GO:0001006 | RNA polymerase III type 3 promoter sequence-specific DNA binding | molecular_function |
| GO:0001139 | RNA polymerase II complex recruiting activity | molecular_function |
| id | description |
|---|---|
| ko03021 | Transcription machinery |
| id | description |
|---|---|
| ZDB-GENE-040801-43 | Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and TBP-class protein binding activity. Predicted to be involved in DNA-templated transcription, initiation; cellular response to oxidative stress; and regulation of transcription by RNA polymerase III. Predicted to act upstream of or within transcription preinitiation complex assembly. Predicted to be part of transcription factor TFIIIB complex and transcription preinitiation complex. Predicted to be active in nucleus. Orthologous to human BRF2 (BRF2 RNA polymerase III transcription initiation factor subunit). |
| ensembl_id | ENSDART00000160174 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006123 | lncRNA | downstream | 421910 | 40851137 ~ 40857097 (-) | True | XLOC_003028 |
| TCONS_00005779 | lncRNA | downstream | 657052 | 40620981 ~ 40621955 (-) | True | XLOC_003023 |
| TCONS_00005521 | lncRNA | downstream | 779798 | 40498159 ~ 40499209 (-) | True | XLOC_003005 |
| TCONS_00005520 | lncRNA | downstream | 788370 | 40489637 ~ 40490637 (-) | True | XLOC_003004 |
| TCONS_00006122 | lncRNA | downstream | 2188919 | 39087325 ~ 39090088 (-) | True | XLOC_002973 |
| TCONS_00005562 | lncRNA | upstream | 65199 | 41368108 ~ 41368637 (-) | True | XLOC_003034 |
| TCONS_00006124 | lncRNA | upstream | 680000 | 41982909 ~ 41986276 (-) | False | XLOC_003040 |
| TCONS_00006126 | lncRNA | upstream | 680000 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00006125 | lncRNA | upstream | 680000 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00005781 | lncRNA | upstream | 680000 | 41982909 ~ 41986363 (-) | False | XLOC_003040 |
| TCONS_00005552 | mRNA | downstream | 121872 | 41130524 ~ 41157135 (-) | True | XLOC_003031 |
| TCONS_00005551 | mRNA | downstream | 122659 | 41060739 ~ 41156348 (-) | False | XLOC_003031 |
| TCONS_00005549 | mRNA | downstream | 310912 | 40951697 ~ 40968095 (-) | False | XLOC_003030 |
| TCONS_00005550 | mRNA | downstream | 314268 | 40953496 ~ 40964739 (-) | True | XLOC_003030 |
| TCONS_00005548 | mRNA | downstream | 339704 | 40913303 ~ 40939303 (-) | True | XLOC_003027 |
| TCONS_00005558 | mRNA | upstream | 15674 | 41318583 ~ 41352502 (-) | False | XLOC_003033 |
| TCONS_00005559 | mRNA | upstream | 49244 | 41352153 ~ 41352608 (-) | True | XLOC_003033 |
| TCONS_00005560 | mRNA | upstream | 59481 | 41362390 ~ 41397663 (-) | False | XLOC_003034 |
| TCONS_00005561 | mRNA | upstream | 59481 | 41362390 ~ 41400049 (-) | False | XLOC_003034 |
| TCONS_00005563 | mRNA | upstream | 106346 | 41409255 ~ 41450367 (-) | False | XLOC_003035 |
| TCONS_00005547 | other | downstream | 375770 | 40903121 ~ 40903237 (-) | True | XLOC_003029 |
| TCONS_00005540 | other | downstream | 537560 | 40741330 ~ 40741447 (-) | True | XLOC_003024 |
| TCONS_00005531 | other | downstream | 740960 | 40537440 ~ 40538047 (-) | True | XLOC_003015 |
| TCONS_00005526 | other | downstream | 757907 | 40520823 ~ 40521100 (-) | True | XLOC_003010 |
| TCONS_00005525 | other | downstream | 761409 | 40516749 ~ 40517598 (-) | True | XLOC_003009 |
| TCONS_00005570 | other | upstream | 666982 | 41969891 ~ 41979664 (-) | True | XLOC_003039 |
| TCONS_00005579 | other | upstream | 808663 | 42111572 ~ 42131408 (-) | True | XLOC_003044 |
| TCONS_00005596 | other | upstream | 1609024 | 42911933 ~ 42912047 (-) | True | XLOC_003057 |
| TCONS_00005598 | other | upstream | 1689937 | 42992846 ~ 43028806 (-) | True | XLOC_003058 |
| TCONS_00005609 | other | upstream | 2233051 | 43535960 ~ 43536095 (-) | True | XLOC_003064 |
