RNA id: TCONS_00005552


Basic Information

Item Value
RNA id TCONS_00005552
length 1451
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_003031
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41060739 ~ 41157135 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCCGGTGTAGTTTCCGGTTAGCTGGCGCATCTGCAGCATCCAAAGCCGCAGACGAGAATCGCCATGAACAACACGGTCATTTCATTCTGATTTTGATTCTGTCCGATTAAAATCAAACCGCATCCGTTTACCGTTTACCGGCAGGACACCGACGGCAGCGCGCAGATGAGAGCTGTCACGCGTCCGGGCGGGTTTTGCAGGAATGCTAGCGTTAGCGCCTAGCCCACTGTGTTTGCAATCTAAATAGCTGTTTGTTCATCAGATAAGAGACTAATTCACACGCGTATGGGCGTCTAATTAGCCAAATTATCCGTTATTCTGATTAACATCCGCATGTCATCTGTGTTTTCTGTGAAAAGTGGCTGGTTTTCTTGAGCTGCACAGCTGGCTGATGATGGAGAGTTTGACTTTCATCCATCAAAACAATGATTTCTGTGCACTTCTCGTTTGAAGGTCCGTTTTTCAACCAATGTTGAATGTTTACATCGATTTCAGCTGGATTCAAGTATTTATATCGCCATATAGACACCAAACACATCAATCATATCAGGCCATCTCTGATAGATGCTGTATATTTGGATATAGTCGACTGTGATGCTTTAATTTTGCACATATACTACTTGTTTTCGTTTACCTGTACGGTCCATTTAAGCAGTGATCAGCTCTAGAACTGGGCCTAGAGTCCATGTTTGCCAGTCATAGCTGATATAGACCTCCTGCACCAGAACTACCAGCCTGCTTCAGTTTCTTATAGACTCTCATTTAGCAGCTTTGGGATCTTGTAGACATCATGAAGAAGTTCTTTGACTCCCGGAGAGAGCTGGTGGGCTCCGGGCCAGGTTCTGGAGGGGGAGCTGGAGGTTCTGGGTCTGGCAGTGGTGCTGGTGGGAATTTCATCGGAAGGAATTTTACTGTAGGAAGACACCAGGTCACTGTGGAGGAAACTCTGGCTGaaggTGGTTTTGCAATCGTATTTCTGGTGCGGACTAATCAAGGCGTTCGCTGTGCCCTAAAGAGGATGTATGTCAACAACGAACATGACCTGCAGGTCTGCAAACGCGAGATCCAGATCATGCGGGATCTGAACGGTCATAAGAACATCGTGGGCTTCCTGGACTCCAGCATCACAGCAGTGGGAGGTGGAGATGTCTGGGAGGTGTTCATCCTCATGGATTTCTGTAGAGGAGGTCAGGTGGTGAACCTGATGAACCAGCGTCTGCAGACAGGCTTCAGCGAACAGGAGGCTCTCCAGATCTTCTGTGATACATGTGAAGCTGTAGCACGTCTGCACCAGTACAAAACTCCCATAATCCACCGAGACCTCAAGGTGGAGAACATCCTCCTCCATGACAGAGGACACTATGTTCTGTGTGATTTTGGCAGCGCCACTATGAAGTTTCAAAACCCCCAAAGTGAAGGAGTGACTGCGGTCGAGGACgaaattaaaaa

Function

GO:

id name namespace
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:2000369 regulation of clathrin-dependent endocytosis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0035612 AP-2 adaptor complex binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-25 Predicted to enable AP-2 adaptor complex binding activity and protein serine/threonine kinase activity. Predicted to be involved in positive regulation of Notch signaling pathway; protein phosphorylation; and regulation of clathrin-dependent endocytosis. Predicted to be active in cytoplasm. Orthologous to human AAK1 (AP2 associated kinase 1).

Ensembl:

ensembl_id ENSDART00000134851

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006123 lncRNA downstream 273427 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 508569 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 631315 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 639887 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 2040436 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005562 lncRNA upstream 210973 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 825774 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 825774 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 825774 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 825774 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005549 mRNA downstream 162429 40951697 ~ 40968095 (-) False XLOC_003030
TCONS_00005550 mRNA downstream 165785 40953496 ~ 40964739 (-) True XLOC_003030
TCONS_00005545 mRNA downstream 190818 40848354 ~ 40939706 (-) False XLOC_003027
TCONS_00005546 mRNA downstream 190818 40858104 ~ 40939706 (-) False XLOC_003027
TCONS_00005548 mRNA downstream 191221 40913303 ~ 40939303 (-) True XLOC_003027
TCONS_00005555 mRNA upstream 121872 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005554 mRNA upstream 121872 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005553 mRNA upstream 121872 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005556 mRNA upstream 122526 41279661 ~ 41285235 (-) False XLOC_003032
TCONS_00005557 mRNA upstream 122530 41279665 ~ 41302841 (-) True XLOC_003032
TCONS_00005547 other downstream 227287 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 389077 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 592477 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 609424 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 612926 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 812756 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 954437 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1754798 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1835711 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 2378825 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU414879 True 986 TUCP 0.46 1 CI01000158 314404 ~ 315389 (-)
rainbow trout (Oncorhynchus mykiss) TU414879 True 946 lncRNA 0.47 2 NC_048569.1 9511683 ~ 9515139 (+)