LOC118936431 (LOC106601789)


Basic Information

Item Value
gene id LOC118936431
gene name LOC106601789
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55334459 ~ 55341851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941582.1
aTAGCTTTAAATGGTGTTCCAGTTATACTTCAGATGTTATGGTTGTCAACACACATTGCCATTAGGTGAATCACTTCATCAGAACCAGTGTTACAGTTGTCAAACTATCAAAGCAAGGAGCGAACTGTTGAAGGCAAATTGTGTTATgaactgatactactactactactaagcaCAACTGCACTGGATAAAACTTACTGTTGTAAATGGACTGGCCAGGTGTATGGGTTTGAGGACAGAGAAACGTCATGTTTGCTTTCTGGATCACAAAGCTGCAGGAGGAGAGTGCTGTTGGGTAATAGGCAAAAATCAAGAGAGGCAGAGATCTGCACATCACTGGCTTACAGAGCGGACACCACCTCACCCAGATAACGCACGTGTCCCTCAGGCACAGAGAACCATGGCGTTTACAGGGTTGCTGAGAGAGGAGGACATCAGGGCTGCCGTCAAGGCTTGTCAAGCTCCAGGCACATTCAACTTCAAGTTGTTCTTTGCACAAGTGGGACTGACCGGCAAGTCAGAGGCAGAGGGCCAACGGGTGTTCAGAGTCCTGGACCAAGACCAGAGTGGATACATAGAGGAAGAGGAGCTGAAATTATTCCTGCAGAACTTCTCCTCAGGGGCCAGGGAGCTGACTGATGCTGAGACCAGAACTCTCCTAGCGgcaggagacagagacggggatgGAAAGATAGGGATGGAAGAGTTCTGCGCTTTGCTGAAATGAAGCTTTCACTCCTCATCAGGGctgtctcttttttttctttcttttggtACTTTTTACAACGTCTGGAACCCAAAACGCCCAGATTCAGCAAGTCTGGAGGGAAATGCCCACCTCAGCGACTCTATTTACATGCCTGCTGGTCCTCTCCCCGGTTGATGGTGCATCTTGGCACATAAATTCGTAGCTGTGGATATTAGGTGTATAAGAGTGTCAGTCTATCCATTGGGTAACTGGTATGGTTTAATAAAGGATGTAAAACGTA

Function

NR:

description
PREDICTED: parvalbumin beta-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941582.1 True 989 mRNA 0.47 6 55334459 55341851

Neighbor

gene id symbol gene type direction distance location
pvalb1 pvalb1 coding downstream 10149 55321599 ~ 55324310 (-)
LOC110486849 LOC106601824 coding downstream 17725 55312290 ~ 55316734 (-)
aimp2 aimp2 coding downstream 41028 55289150 ~ 55293431 (-)
LOC110486847 LOC106606650 coding downstream 57788 55254697 ~ 55276671 (-)
LOC110516592 LOC106601772 coding downstream 92309 55209614 ~ 55242150 (-)
LOC110519575 LOC106606659 coding upstream 53013 55394864 ~ 55419061 (-)
LOC110485238 LOC106601829 coding upstream 93285 55434816 ~ 55509918 (-)
LOC110538789 LOC106606674 coding upstream 191396 55533247 ~ 55574537 (-)
LOC110486851 LOC106606669 coding upstream 687570 56029421 ~ 56036822 (-)
LOC110485237 LOC106606659 coding upstream 746441 56088292 ~ 56110984 (-)
G1188693 NA non-coding downstream 7105 55327073 ~ 55327354 (-)
G1188675 NA non-coding downstream 29573 55304637 ~ 55304886 (-)
G1188669 NA non-coding downstream 46245 55284446 ~ 55288214 (-)
G1188638 NA non-coding downstream 79977 55243545 ~ 55254482 (-)
G1188717 NA non-coding upstream 30348 55372199 ~ 55372529 (-)
G1188682 NA non-coding upstream 87883 55429734 ~ 55432178 (-)
G1188744 NA non-coding upstream 175339 55517190 ~ 55517458 (-)
G1188752 NA non-coding upstream 181088 55522939 ~ 55523269 (-)
LOC110486836 LOC106606701 other downstream 308011 55022619 ~ 55026465 (-)
LOC110485228 LOC106606689 other downstream 503137 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 585801 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 734010 54599401 ~ 54600449 (-)
G1189279 LOC106601786 other upstream 570373 55912224 ~ 55915885 (-)
G1189660 LOC106601786 other upstream 1328442 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1738966 57054453 ~ 57085521 (-)

Expression


Co-expression Network