LOC110486851 (LOC106606669)


Basic Information

Item Value
gene id LOC110486851
gene name LOC106606669
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56029421 ~ 56036822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941583.1
tttggttcatcagacaTAGCTTTAAATGGTGTTCCAGTTATACTTCAGATGTTATGGTTGTCAACACACATTGCCATTAGGTGAATCACTTCATCAGAACCAGTGTTACAGTTGTCAAACTATCAAAGCAAGGAGCGAACTGTTGAAGGCAAATTGTGTTATgaactgatactactactactactaagcaCAACTGCACTGGATAAAACTTACTGTTGTAAATGGACTGGCCAGGTGTATGGGTTTGAGGACAGAGAAACGTCATGTTTGCTTTCTGGATCACAAAGCTGCAGGAGGAGAGTGCTGTTGGGTAATAGGCAAAAATCAAGAGAGGCAGAGATCTGCACATCACTGGCTTACAGAGCGGACACTACCTCACCCAGATAACGCACGTGTCCCTCAGGCACAGAGAACCATGGCGTTTACAGGGTTGCTGAGAGAGGAGGACATCAGGGCTGCCGTCAAGGCTTGTCAAGCTCCAGGCACATTCAACTTCAAGTTGTTCTTTGCACAAGTGGGACTGACCGGCAAGTCAGAGGCAGAGGGCCAACGGGTGTTCAAAGTCCTGGACCAAGACCAGAGTGGATACATAGAGGAAGAGGAGTTGAAATTATTCCTGCAGAACTTCTCCTCAGGGGCCAGGGAGCTGACTGATGCTGAGACCAGAACTCTCCTAGCGgcaggagacagagacggggatgGAAAGATAGGGATGGAAGAGTTCTGCGCTTTGCTGAAATGAAGCTTTCACTCCTCATCAGGGctgtctcttttttttctttcttttggtACTTTTTACAACGTCTGGAACCCAAAACGCCCAGATTCAGCAAGTCTGGAGGGAAATGCCCACCTCAGCGACTCTATTTACATGCCTGCTGGTCCTCTCCCCGGTTGATGGTGCATCTTGGCACATAAATTCGTAGCTGTGGATATTAGGTGTATAAGAGTGTCAGTCTATCCATTGGGTAACTGGTATGGTTTAATAAAGGATGTAAAACGTA
>XM_036941584.1
ctagtttggttcatcagacaTAGCTTTAAATGGTGTTCCAGTTATACTTCAGATGTTATGGTTGTCAACACACATTGCCATTAGGTGAATCACTTCATCAGAACCAGTGTTACAGTTGTCAAACTATCAAAGCAAGGAGCGAACTGTTGAAGGCAAATTGTGTTATgaactgatactactactactactaagcaCAACTGCACTGGATAAAACTTACTGTTGTAAATGGACTGGCCAGGTGTATGGGTTTGAGGACAGAGAAACGTCATGTTTGCTTTCTGGATCACAAAGCTGCAGGAGGAGAGTGCTGTTGGGTAATAGGCAAAAATCAAGAGAGGCAGAGATCTGCACATCACTGGCTTACAGAGCGGACACTACCTCACCCAGATAACGGCACAGAGAACCATGGCGTTTACAGGGTTGCTGAGAGAGGAGGACATCAGGGCTGCCGTCAAGGCTTGTCAAGCTCCAGGCACATTCAACTTCAAGTTGTTCTTTGCACAAGTGGGACTGACCGGCAAGTCAGAGGCAGAGGGCCAACGGGTGTTCAAAGTCCTGGACCAAGACCAGAGTGGATACATAGAGGAAGAGGAGTTGAAATTATTCCTGCAGAACTTCTCCTCAGGGGCCAGGGAGCTGACTGATGCTGAGACCAGAACTCTCCTAGCGgcaggagacagagacggggatgGAAAGATAGGGATGGAAGAGTTCTGCGCTTTGCTGAAATGAAGCTTTCACTCCTCATCAGGGctgtctcttttttttctttcttttggtACTTTTTACAACGTCTGGAACCCAAAACGCCCAGATTCAGCAAGTCTGGAGGGAAATGCCCACCTCAGCGACTCTATTTACATGCCTGCTGGTCCTCTCCCCGGTTGATGGTGCATCTTGGCACATAAATTCGTAGCTGTGGATATTAGGTGTATAAGAGTGTCAGTCTATCCATTGGGTAACTGGTATGGTTTAATAAAGGATGTAAAACGTA
>TU1356497
ctctctttgtTTGTCGATCCCCAGATTATTCCTGCAGAACTTCTCCTCAGGGGCCAGGGAGCTGACTGATGCTGAGACCAGAACTCTCCTAGCGgcaggagacagagacggggatgGAAAGATAGGGATGGAAGAGTTCTGCGCTTTGCTGAAATGAAGCTTTCACTCCTCATCAGGGctgtctcttttttttctttcttttggtACTTTTTACAACGTCTGGAACCCAAAACGCCCAGATTCAGCAAGTCTGGAGGGAAATGCCCACCTCAGCGACTCTATTTACATGCCTGCTGGTCCTCTCCCCGGTTGATGGTGCATCTTGGCACATAAATTCGTAGCTGTGGATATTAGGTGTATAAGAGTGTCAGTCTATCCATTGGGTAACTGGTATGGTTTAATAAAGGATGTAAAACGTA
>TU1356498
agatactgactggttttcggaCCCACGGCCCTACCTTTATTTTtaagATTATTCCTGCAGAACTTCTCCTCAGGGGCCAGGGAGCTGACTGATGCTGAGACCAGAACTCTCCTAGCGgcaggagacagagacggggatgGAAAGATAGGGATGGAAGAGTTCTGCGCTTTGCTGAAATGAAGCTTTCACTCCTCATCAGGGctgtctcttttttttctttcttttggtACTTTTTACAACGTCTGGAACCCAAAACGCCCAGATTCAGCAAGTCTGGAGGGAAATGCCCACCTCAGCGACTCTATTTACATGCCTGCTGGTCCTCTCCCCGGTTGATGGTGCATCTTGGCACATAAATTCGTAGCTGTGGATATTAGGTGTATAAGAGTGTCAGTCTATCCATTGGGTAACTGGTATGGTTTAATAAAGGATGTAAAACGTA
>TU1356496
TGGATCACAAAGCTGCAGGAGGAGAGTGCTGTTGGGTAATAGGCAAAAATCAAGAGAGGCAGAGATCTGCACATCACTGGCTTACAGAGCGGACACTACCTCACCCAGATAACGCACGTGTCCCTCAGGCACAGAGAACCATGGCGTTTACAGGGTTGCTGAGAGAGGAGGACATCAGGGCTGCCGTCAAGGCTTGTCAAGCTCCAGGCACATTCAACTTCAAGTTGTTCTTTGCACAAGTGGGACTGACCGGCAAGTCAGAGGCAGAGGGCCAACGGGTGTTCA

Function

NR:

description
PREDICTED: parvalbumin beta-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941583.1 False 1004 mRNA 0.47 6 56029421 56036818
XM_036941584.1 False 994 mRNA 0.46 6 56029421 56036822
TU1356497 False 419 lncRNA 0.47 2 56029421 56030165
TU1356498 False 442 lncRNA 0.47 3 56029421 56030411
TU1356496 True 285 lncRNA 0.53 3 56031719 56033376

Neighbor

gene id symbol gene type direction distance location
LOC110538789 LOC106606674 coding downstream 476921 55533247 ~ 55574537 (-)
LOC110485238 LOC106601829 coding downstream 519503 55434816 ~ 55509918 (-)
LOC110519575 LOC106606659 coding downstream 610360 55394864 ~ 55419061 (-)
LOC118936431 LOC106601789 coding downstream 687570 55334459 ~ 55341851 (-)
pvalb1 pvalb1 coding downstream 705111 55321599 ~ 55324310 (-)
LOC110485237 LOC106606659 coding upstream 51470 56088292 ~ 56110984 (-)
LOC110539043 LOC106601829 coding upstream 88468 56125290 ~ 56203810 (-)
LOC110515093 LOC106606674 coding upstream 190221 56226179 ~ 56250925 (-)
LOC110486859 srebf1 coding upstream 874543 56911365 ~ 56957646 (-)
LOC110486860 tom1l2 coding upstream 925255 56960592 ~ 57007990 (-)
G1189290 NA non-coding downstream 7869 56019068 ~ 56021552 (-)
G1189293 NA non-coding downstream 25293 56000004 ~ 56004128 (-)
G1189291 NA non-coding downstream 75268 55944655 ~ 55954153 (-)
G1189238 NA non-coding downstream 202267 55826382 ~ 55827154 (-)
G1189200 NA non-coding downstream 270392 55758169 ~ 55759029 (-)
G1189193 NA non-coding upstream 79341 56116163 ~ 56116471 (-)
G1189186 NA non-coding upstream 82729 56119551 ~ 56123585 (-)
G1189361 NA non-coding upstream 181238 56218060 ~ 56317827 (-)
G1189397 NA non-coding upstream 301294 56338116 ~ 56338331 (-)
G1189279 LOC106601786 other downstream 113536 55912224 ~ 55915885 (-)
LOC110516592 LOC106601772 other downstream 816706 55209614 ~ 55242150 (-)
LOC110486836 LOC106606701 other downstream 1002973 55022619 ~ 55026465 (-)
LOC110485228 LOC106606689 other downstream 1198099 54813122 ~ 54831352 (-)
G1189660 LOC106601786 other upstream 633471 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1043995 57054453 ~ 57085521 (-)
G1190199 LOC106601813 other upstream 1052349 57089171 ~ 57089915 (-)
G1190405 NA other upstream 1459166 57495988 ~ 57499155 (-)

Expression


Co-expression Network