G1189290


Basic Information

Item Value
gene id G1189290
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56019068 ~ 56021552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1356480
cactgaactgttacagtagttcacctcctagagacactgtaacacactgaactgttacagtagttcacctccttgagacactataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctccttgagacactataacacactgaactgttacagtagttcacctcctagagagagacactataacagaCTGAACTGttgcagtagttcacctccttgagacacaataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctcccagAGAAACtgtaacacactgaactgttacagtagttcacctcctggtaacactataacacactaaactgttacagtagttcacctccaagagacactataacacactgaactgttacagtagttcacctcctagagagagacactataacagactgaactgttacagtagttcacctccttgagacactataacacactgaactgttacagtagttcacctccttgagacactatgacacactgaactgttacagtagttcacctcctagagaaactataacacactgaaattttacagttgttcacctccttgagacacaataacacacggaactgttacagtgtttcatgtcttagtgagagacactataacacactgaactgttacagtagttcacctcttagagacattataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtcgTTCACCTCCTTGAGAAACAACAGTAcaatgaactgttacagtagttcacctcttagagacactataacacactgaactgttacagtagttcacctccttgagacactatgacacactgaactgttacagtagttcacctccttgagaaactataacacactgaactgttacagtagttcacctcctagagagagacactatgacacactgaactgttacagtagttcacctccttgagacactataacacactgaactgttacagtagttcacctcctagagagagacaatatgacacactgaactgttacactagttcacctcctagagacactataacacactgaactgttacagtagttcacctccttgagacactataacacactgagctgttacagtagttcaactcctagagacactataacacactgaactgatacagtatttcacgtcttagtgagagacactataacacactgaactgttacagtagttcacctcctagagaaactataacacactgaactgttacaggagttcacatcctggtcgacactataacacactgaactgttacagcaattcacctccttgagacacaataacacacagaactgttacagtatttcatggcttagtgagagacactatgacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtagttcacctcctagagaaacaacagtacactgaactgttacagtagttcacctccttgagaaacaacagtacactgaactgttacagtagttcacctcctagagacacaataacacactgaactgttacagtagttcacctcctagagacacaataacacacagaactCTTACAGTGTTTcatgtcttagtgagagacattataacacactgaactgttacagtagttcagctcctagagacactataacacactgaactgttacagtagttcacctcctagagacactataacacaatgaactgttacagtatttaatgtcttagtgagagacattataacacactgaactgttacagtagttcacctcctagagacactataacacactgaactgttacagtaggtcacctcatagagacacaacagtacactgaactgatacagtagttcacctcttagaaacactataacacactgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcaccacttagagacactataacacactaaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcaccacttagagacactataacactctgaactgttacagtagttcacctcctggtgacactataacacactgaactgttacaatagttcacctcataaatagagacacaataacacactgaagtgttgaagtagttcacatcctagagacactataacacactgaacttttacagtagttcaccttcaagagaaactataacacactgaacaattacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1356480 True 2441 lncRNA 0.40 2 56019068 56021552

Neighbor

gene id symbol gene type direction distance location
LOC110538789 LOC106606674 coding downstream 466568 55533247 ~ 55574537 (-)
LOC110485238 LOC106601829 coding downstream 509150 55434816 ~ 55509918 (-)
LOC110519575 LOC106606659 coding downstream 600007 55394864 ~ 55419061 (-)
LOC118936431 LOC106601789 coding downstream 677217 55334459 ~ 55341851 (-)
pvalb1 pvalb1 coding downstream 694758 55321599 ~ 55324310 (-)
LOC110486851 LOC106606669 coding upstream 7869 56029421 ~ 56036822 (-)
LOC110485237 LOC106606659 coding upstream 66740 56088292 ~ 56110984 (-)
LOC110539043 LOC106601829 coding upstream 103738 56125290 ~ 56203810 (-)
LOC110515093 LOC106606674 coding upstream 205491 56226179 ~ 56250925 (-)
LOC110486859 srebf1 coding upstream 889813 56911365 ~ 56957646 (-)
G1189293 NA non-coding downstream 14940 56000004 ~ 56004128 (-)
G1189291 NA non-coding downstream 64915 55944655 ~ 55954153 (-)
G1189238 NA non-coding downstream 191914 55826382 ~ 55827154 (-)
G1189200 NA non-coding downstream 260039 55758169 ~ 55759029 (-)
G1188840 NA non-coding downstream 384472 55634306 ~ 55634596 (-)
G1189193 NA non-coding upstream 94611 56116163 ~ 56116471 (-)
G1189186 NA non-coding upstream 97999 56119551 ~ 56123585 (-)
G1189361 NA non-coding upstream 196508 56218060 ~ 56317827 (-)
G1189279 LOC106601786 other downstream 103183 55912224 ~ 55915885 (-)
LOC110516592 LOC106601772 other downstream 806353 55209614 ~ 55242150 (-)
LOC110486836 LOC106606701 other downstream 992620 55022619 ~ 55026465 (-)
LOC110485228 LOC106606689 other downstream 1187746 54813122 ~ 54831352 (-)
G1189660 LOC106601786 other upstream 648741 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1059265 57054453 ~ 57085521 (-)
G1190199 LOC106601813 other upstream 1067619 57089171 ~ 57089915 (-)
G1190405 NA other upstream 1474436 57495988 ~ 57499155 (-)

Expression


Co-expression Network