LOC110512346 (cggbp1)


Basic Information

Item Value
gene id LOC110512346
gene name cggbp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58614388 ~ 58617674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592786.2
TTTTTCACCCTGTCCTGTCAGCGTATTCACATGCGAAGATGATTGCGCTAGAACACAATAGAAAGTCGAcaatcaacagtcacttcaaatCAGCAAACCATATGAGAATGTCAGAACAGTTCCCACAGTAGTGGCAGATCACCATGACTGAAGTGGTAGCAGGGAAGACTGTGGCAAGCGCTGAAAGAATCAAGATTTGTGAAGATTGGGTACGCACTTGCACAGCAGTCAACATGCCCTGTTTCAAAAGTGATCACCCCTCAATTAGGCAGTTTCTGAAGGAGAAAGTCATCAATGGAAGTGCCATCCCTGGATATCACCAGTTACAGGAAAACTTGGGAGATGTCTACTTGAAGGTGAAGGAAGAACTCAAGCAACATCTTGCAGGGAAACCAGTGACAGTCATCTTTGATGAAACTCCAGATGTTGAAGTGTGTGGCCAAAGTGCACCACAGTCTGTAGAGAATCTCCATGAGATGCTACAAGTCAAAGAGCAGGTTCAGCCGCTGCAGATTCAGCTGAACATCATGACAGACAAGTGCAAAGTCATCCTGCAGCTTCTCGACATCTTCTAGAGCAGACGCCCCGTGACAACAAAGATCTTTCAGTATTTAGAGGACTTGCAGATGAACATTGCAGCCAACAAAGAACTACAGTATGAGGCTTGTTCACACTGCTTTGACACAGTTGATGACTTGCCCTTTGCTGTGAAAACCAAACTCTTGATTCATACAGCAATGCAGAGGAAAAACTTACAAAGTACATGTCAGATGGTCAGCCTGCCATGGAGTTCCTCCAAGAAGTTAGGGTGCTTGATCCACGTCACATTGCGTTTATGGATGACAGAGTGTCCAGCTTCACGGCTATTCCAGGCTTCAGTAAggtacagagagatgaacccgaTGCCTACTTCACCAATGTAGGACCAGCACCACTGAGAGCCACAGTGAGTGGGGTGGTGGATTTGGATATCTTCTGGGATGGACTTCAAGAGAGACTTCCTGTGCTGAACATTCTGACCAAACACTACAAAGATGCCGTCTCAAACTCTGCTGATGCTGAGCGAAGCAACAGTATCTACAAGCTTGTGTTATCCAGCTGTAGGCGATAAACCTCTAACAACAACTTACGAGCCTTGGTCTTCATGTACCACAACCAACGACTCCGCAGTGGAGGAATTGATAAGGAGGAGGATAGGGAGGATGAAATGGATAATTACTTTGAGATATAGGCCTAGATGAGCTAGGCCCTTGGTCACCCCCCACCTCTTGTTATGTTCAGAAAAATAACTGTGCTTGTTCAAGAAAAATAAACAGCACAAAAGAGCACTTTGTCTCTAATTGTTTTCATGGAAGATGAACTTGAGATATAATGTGTCTTAATTGCAGATTGGACCCCAGGTGTTTCTTTTGTGCCAGTTTAATTTTTTTGAAAACGGAGGAATGCCTGTTGTTGGAACTCTGAGCTAGCTTCCACACATTTTTTTGTTCAGAAAAATAACTGTTTGTTCTGGACAATTAACAAAATTGAGCACTTTAAATGTTAATTGTTTTTGTATTATGTATTCTGCTTAATATAGTCCTAAAACTGAGCACATATGACTTTTTATTGCTTTATACGAAATGAATGTGAAAGATAA
>XM_036941724.1
TTTTTCACCCTGTCCTGTCAGCGTATTCACATGCGAAGATGATTGCGCTAGAACACAATAGAAAGTCGAcaatcaacagtcacttcaaatCAGCAAACCATATGAGAATGTCAGAACAGTTCCCACAGTAGTGGCAGATCACCATGACTGAAGTGGTAGCAGGGAAGACTGTGGCAAGCGCTGAAAGAATCAAGATTTGTGAAGATTGGGTACGCACTTGCACAGCAGTCAACATGCCCTGTTTCAAAAGTGATCACCCCTCAATTAGGCAGTTTCTGAAGGAGAAAGTCATCAATGGAAGTGCCATCCCTGGATATCACCAGTTACAGGAAAACTTGGGAGATGTCTACTTGAAGGTGAAGGAAGAACTCAAGCAACATCTTGCAGGGAAACCAGTGACAGTCATCTTTGATGAAACTCCAGATGTTGAAGTAAGATGTCTACTAAACATCCTTATCGCACCACTTGAAAGGGATACCTCTGGGAGAATTCTTGCCTACCTTGCAGAGACAGTGTTTCTGGAGCAGTGCAACCATTCAACAGTTTCCATGGCGGTTTGTCAAATGTCTACAAGACTACAATATCTCCAATGATGACGAATTCATTGTCTTTGACACAGACAATGCTGCGTACATGAAAGCCTACAAAGCTGCACTTCAGTCATTGTTCCCCAACTCTCTGCACATAACATGCATGGCTCACATCATGAATCTGATAGGGAGTGCTTTCCGCTAACCTTTTGACCAGCTGAACGCATTCATGCTAAGTTTTTCGCAGATGTTTTACCAGGCAGGGGCACGCAAGATAAGATACCTTACCTTCCTCACCACCAAACTGGCAGGACGGAAGAGAGCAACTATGGCTCCCAATTCATGTGCAAGATGCTGGAACTCATGGTTCTCAGCAGTGCAGTAccactcgcacacactttttcagttctgcccccaaatgttctataggattgaggtcagggctttgtgatggccactccaataccttgaatttgttgtccttaagccattttgccaca

Function

symbol description
cggbp1 Enables DNA-binding transcription factor binding activity; double-stranded DNA binding activity; and identical protein binding activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of gene expression, epigenetic. Located in nucleoplasm.

NR:

description
CGG triplet repeat-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592786.2 False 1639 mRNA 0.43 3 58614388 58617674
XM_036941724.1 True 1030 mRNA 0.45 2 58616182 58617674

Neighbor

gene id symbol gene type direction distance location
LOC110486955 NA coding downstream 10413 58588778 ~ 58603975 (-)
LOC110514412 NA coding downstream 25863 58561680 ~ 58588526 (-)
LOC110538556 LOC106606549 coding downstream 106559 58504750 ~ 58507829 (-)
LOC110538558 LOC106606549 coding downstream 114421 58454343 ~ 58499967 (-)
LOC110486946 LOC106601863 coding downstream 188335 58372669 ~ 58426053 (-)
LOC110486950 NA coding upstream 7260 58624934 ~ 58666018 (-)
LOC118938334 NA coding upstream 50943 58668617 ~ 58672886 (-)
LOC118938335 NA coding upstream 57745 58675419 ~ 58679236 (-)
LOC100136119 pdgfa coding upstream 301162 58918836 ~ 58956176 (-)
prkar1b prkar1b coding upstream 370225 58987899 ~ 59192472 (-)
G1191230 NA non-coding downstream 46096 58567742 ~ 58568292 (-)
G1191187 NA non-coding downstream 102965 58510541 ~ 58511423 (-)
G1191166 LOC106606549 non-coding downstream 107027 58454351 ~ 58507361 (-)
G1191186 NA non-coding downstream 166519 58446718 ~ 58447869 (-)
G1191176 NA non-coding downstream 205986 58407816 ~ 58408402 (-)
G1191265 NA non-coding upstream 89071 58706745 ~ 58707672 (-)
G1191273 NA non-coding upstream 105528 58723202 ~ 58723434 (-)
G1191275 NA non-coding upstream 108068 58725742 ~ 58725976 (-)
G1191290 NA non-coding upstream 129413 58747087 ~ 58747403 (-)
G1191299 NA non-coding upstream 147032 58764706 ~ 58764989 (-)
G1190628 NA other downstream 620364 57964952 ~ 57994099 (-)
LOC110486915 LOC106606556 other downstream 907598 57698059 ~ 57706813 (-)
G1190405 NA other downstream 1115233 57495988 ~ 57499155 (-)
G1191298 LOC106606554 other upstream 142049 58759723 ~ 58762086 (-)
G1191335 NA other upstream 250389 58868063 ~ 58868971 (-)
G1192082 NA other upstream 288479 58906153 ~ 58909232 (-)
G1192158 NA other upstream 502338 59119541 ~ 59121156 (-)
G1192205 NA other upstream 657467 59275141 ~ 59275849 (-)

Expression


Co-expression Network