XLOC_030587 (dnm1b)


Basic Information

Item Value
gene id XLOC_030587
gene name dnm1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 63668735 ~ 63737734 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059701
TGGAAAATTGAATCAAACGCTGTAAGGGACAGCTTTTAGATATTAAGGGTCCTGCCAGACCCAGTGAAGACTCCATATAGGGTCGAATACATCCGTTTTTTTCATTCACCGTGAAACAGAGCCTATTATTTACTCCTCAAGATGGGCAATCGGGGAATGGAGGACTTGATTCCTCTGGTAAACCGAATGCAGGATGCCTTCTCAGCCATCGGACAAAATGCCAACCTGGACCTGCCTCAAATCGCGGTGGTGGGCGGTCAGAGTGCTGGGAAAAGCTCGGTTTTGGAGAACTTCGTCGGGAAGGATTTTCTGCCTCGTGGATCTGGTATTGTCACTCGGCGCCCCCTAGTGCTCCAGCTGATCAACTGCCCTACTGAATATGCTGAGTTTTTACATTGCAAGGGGAAGAAGTTTACAGATTTTGATGAGGTCCGCCAGGAGATTGAGGCGGAGACAGATCGCATCACCGGCCAAAACAAAGGCATTTCGCCAGTCCCTATCAATCTGCGTGTCTATTCACCTAATGTCCTGAACCTCACCCTCGTGGATTTACCTGGTATGACCAAAGTGCCCGTCGGGGACCAGCCGGCTGACATTGAGGCCCAGATCAGGGATATGCTAATGCAGTTTGTGACTAAGGAGAACTGCTTGTTGCTGGCCGTGTCTCCTGCCAACTCTGATCTGGCCAACTCAGATGCCCTCAAGATTGCCAAGGAGGTGGATCCTCAAGGTATGAGAACTATAGGTGTGATCACTAAATTGGATCTAATGGACGAAGGAACCGATGCACGTGAAATCCTTGAGAACAAGCTTCTTCCCTTACGCAGAGGCTACATTGGGGTTGTGAACCGCAGTCAGAAGGACATTGATGGCAAGAAGGACATCACTGCGGCCATGAGTGCTGAAAGGAAGTTTTTCCTCACCCATCCGTCCTACCGACACCTGGCCGATCGCATGGGGACTCCATACCTGCAAAAAGCGCTTAATCAGCAATTGACTAATCACATCCGAGACACCCTGCCGGGACTGAGGAATAAACTTCAGAGCCAGTTACTGTCCATTGAGAAGGAGGTGGAGGAGTACAAGCACTTCCGCCCTGATGATCCTTCCCGCAAAACCAAAGCTCTGCTACAGATGGTGCAGCAGTTTGCGGTGGATTTCGAGAAGTGCATCGAGGGTTCAGGAGATCAGGTGGACACGGTGGAGCTTTCCGGAGGTGCGAGGATCAATCGCATCTTCCACGAGCGCTTCCCCTTTGAACTGGTTAAGATGGAGTTTGATGAAAAAGAGCTGCGGAAGGAGATCAGTTACGCCATCAAGAACATTCACGGTATCAGGACCGGTCTGTTTACTCCAGACATGGCTTTCGAGACTATTGTTAAACGGCAGATCGCCAAGATCAAAGAGCCATGCCAGAAATGTGTAGACCTGGTCATCACCGAGCTGGTCAATACAGTCAGGCAGTGCACAAAGAAGCTGGCCCAATACCCCATGCTTAGAGAGGAAATGGAGAGGATTGTCACCCAGCATATCCGCGATCGAGAGAGTCGCACTAAGAATCAGGTCATGCTGCTAATAGACATTGAGTTAGCCTACATGAACACCAATCATGAGGATTTCATTGGCTTTGCAAACGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAGGATGAGATAATGGTGATCAGAAAGGGTTGGCTCACCATCAATAACATTGGCATCATGAAAGGAGGAGCGAAGGAGTACTGGTTTGTCATGACCGCTGAAAATCTGTCCTGGTACAAGGATGATGAGGAGAAAGAGAAGAAGTACATGCTGCCATTGGACAACCTGAAACTCAGAGATATCGAGAAGAGTTTCATGTCCAGCAAGCACGTGTTTGCTCTCTTCAACACTGAACAAAGGAACGTATATAAAGACTACAGGCAGTTGGAGTTGGCTAGCGACACTCAGGAGGAGGTGGACAGTTGGAAAGCATCCTTCTTACGAGCTGGAGTTTACCCAGAGCGCATCACTGACAAAGAGAAGCAGAGTGACACCAGTGACGAGAGCAGCTCGGATGGCTTCATGCACTCCATGGATCCTCAGCTTGAGAGGCAGGTGGAGACCATCAGAAACCTTGTGGATTCCTACATGGCCATTGTCAACAAGACTGTGCGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAATACTAAGGACTTCATCCATGCTGAGCTGCTAGCTAACCTGTACTCATGTGGAGACCAGAACACTCTGATGGAGGAGTCTGCAGAGCAGGCTCAGCACAGGGAGGAGATGCTGCGCATGTACCACGCTCTAAAAGAGGCCCTGAACATCATCGGGGACATCAGCACCAGCACCGTCTCCACTGCCATGCCTCCACCGGTCGATGACTCCTGGCTGCAGGTACAAGGAGGACCTTCAGGGCGCAGATCTCCAATGTCTAGCCCCACTCCTCAACGCCGGGCCCCACCGGGACCCCCTCGTCCAGGTGGACGCACTGCTCCAGGACCCCCTACTATTGGTGCTCCTCCTGTGCCATCCAGACCCGGAGCCTCTCCAGACCCCTTCGGTGCCCCTCCACCACAGGTCCCCTCTCGTCCCAACCGTGCACCACCCGGTGTCCCCAGAATTTCTATCAGTGACCAATGAGGAGTTACGCAAATGTCCTTCTGTACGTCTGCGTTCATCAATCTCTCTGTTTTCATCTCTGAAGTCGGAGAGCGCCAGCCTCAAACACCAGAGCCAACAGAGACTCAGCAGACAGAAGATAAACActgacacacaagcacacacagtcCACATACAATATATGTTTACTTGAAGAAGTACTTTCTCTTCTACAAATATATACGCCAAGAATGAACATTAGTGATATTTTAAATCGATCTAATA
>TCONS_00059702
ATGGGCAATCGGGGAATGGAGGACTTGATTCCTCTGGTAAACCGAATGCAGGATGCCTTCTCAGCCATCGGACAAAATGCCAACCTGGACCTGCCTCAAATCGCGGTGGTGGGCGGTCAGAGTGCTGGGAAAAGCTCGGTTTTGGAGAACTTCGTCGGGAAGGATTTTCTGCCTCGTGGATCTGGTATTGTCACTCGGCGCCCCCTAGTGCTCCAGCTGATCAACTGCCCTACTGAATATGCTGAGTTTTTACATTGCAAGGGGAAGAAGTTTACAGATTTTGATGAGGTCCGCCAGGAGATTGAGGCGGAGACAGATCGCATCACCGGCCAAAACAAAGGCATTTCGCCAGTCCCTATCAATCTGCGTGTCTATTCACCTAATGTCCTGAACCTCACCCTCGTGGATTTACCTGGTATGACCAAAGTGCCCGTCGGGGACCAGCCGGCTGACATTGAGGCCCAGATCAGGGATATGCTAATGCAGTTTGTGACTAAGGAGAACTGCTTGTTGCTGGCCGTGTCTCCTGCCAACTCTGATCTGGCCAACTCAGATGCCCTCAAGATTGCCAAGGAGGTGGATCCTCAAGGTATGAGAACTATAGGTGTGATCACTAAATTGGATCTAATGGACGAAGGAACCGATGCACGTGAAATCCTTGAGAACAAGCTTCTTCCCTTACGCAGAGGCTACATTGGGGTTGTGAACCGCAGTCAGAAGGACATTGATGGCAAGAAGGACATCACTGCGGCCATGAGTGCTGAAAGGAAGTTTTTCCTCACCCATCCGTCCTACCGACACCTGGCCGATCGCATGGGGACTCCATACCTGCAAAAAGCGCTTAATCAGCAATTGACTAATCACATCCGAGACACCCTGCCGGGACTGAGGAATAAACTTCAGAGCCAGTTACTGTCCATTGAGAAGGAGGTGGAGGAGTACAAGCACTTCCGCCCTGATGATCCTTCCCGCAAAACCAAAGCTCTGCTACAGATGGTGCAGCAGTTTGCGGTGGATTTCGAGAAGTGCATCGAGGGTTCAGGAGATCAGGTGGACACGGTGGAGCTTTCCGGAGGTGCGAGGATCAATCGCATCTTCCACGAGCGCTTCCCCTTTGAACTGGTTAAGATGGAGTTTGATGAAAAAGAGCTGCGGAAGGAGATCAGTTACGCCATCAAGAACATTCACGGTATCAGGACCGGTCTGTTTACTCCAGACATGGCTTTCGAGACTATTGTTAAACGGCAGATCGCCAAGATCAAAGAGCCATGCCAGAAATGTGTAGACCTGGTCATCACCGAGCTGGTCAATACAGTCAGGCAGTGCACAAAGAAGCTGGCCCAATACCCCATGCTTAGAGAGGAAATGGAGAGGATTGTCACCCAGCATATCCGCGATCGAGAGAGTCGCACTAAGAATCAGGTCATGCTGCTAATAGACATTGAGTTAGCCTACATGAACACCAATCATGAGGATTTCATTGGCTTTGCAAACGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAGGATGAGATAATGGTGATCAGAAAGGGTTGGCTCACCATCAATAACATTGGCATCATGAAAGGAGGAGCGAAGGAGTACTGGTTTGTCATGACCGCTGAAAATCTGTCCTGGTACAAGGATGATGAGGAGAAAGAGAAGAAGTACATGCTGCCATTGGACAACCTGAAACTCAGAGATATCGAGAAGAGTTTCATGTCCAGCAAGCACGTGTTTGCTCTCTTCAACACTGAACAAAGGAACGTATATAAAGACTACAGGCAGTTGGAGTTGGCTAGCGACACTCAGGAGGAGGTGGACAGTTGGAAAGCATCCTTCTTACGAGCTGGAGTTTACCCAGAGCGCATCACTGACAAAGAGAAGAGTGACACCAGTGACGAGAGCAGCTCGGATGGCTTCATGCACTCCATGGATCCTCAGCTTGAGAGGCAGGTGGAGACCATCAGAAACCTTGTGGATTCCTACATGGCCATTGTCAACAAGACTGTGCGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAATACTAAGGACTTCATCCATGCTGAGCTGCTAGCTAACCTGTACTCATGTGGAGACCAGAACACTCTGATGGAGGAGTCTGCAGAGCAGGCTCAGCACAGGGAGGAGATGCTGCGCATGTACCACGCTCTAAAAGAGGCCCTGAACATCATCGGGGACATCAGCACCAGCACCGTCTCCACTGCCATGCCTCCACCGGTCGATGACTCCTGGCTGCAGGTACAAGGAGGACCTTCAGGGCGCAGATCTCCAATGTCTAGCCCCACTCCTCAACGCCGGGCCCCACCGGGACCCCCTCGTCCAGGTGGACGCACTGCTCCAGGACCCCCTACTATTGGTGCTCCTCCTGTGCCATCCAGACCCGGAGCCTCTCCAGACCCCTTCGGTGCCCCTCCACCACAGGTCCCCTCTCGTCCCAACCGTGCACCACCCGGTGTCCCCAGccGTCCGAGCAAAGGAAGCCCTTCTCACAGTGAGAGTCCACAACCTTCGTTTGACTCTTAG
>TCONS_00059703
GCGAGGATCAATCGCATCTTCCACGAGCGCTTCCCCTTTGAACTGGTTAAGATGGAGTTTGATGAAAAAGAGCTGCGGAAGGAGATCAGTTACGCCATCAAGAACATTCACGGTATCAGGACCGGTCTGTTTACTCCAGACATGGCTTTCGAGACTATTGTTAAACGGCAGATCGCCAAGATCAAAGAGCCATGCCAGAAATGTGTAGACCTGGTCATCACCGAGCTGGTCAATACAGTCAGGCAGTGCACAAAGAAGCTGGCCCAATACCCCATGCTTAGAGAGGAAATGGAGAGGATTGTCACCCAGCATATCCGCGATCGAGAGAGTCGCACTAAGAATCAGGTCATGCTGCTAATAGACATTGAGTTAGCCTACATGAACACCAATCATGAGGATTTCATTGGCTTTGCAAACGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAGGTGATCAGAAAGGGTTGGCTCACCATCAATAACATTGGCATCATGAAAGGAGGAGCGAAGGAGTACTGGTTTGTCATGACCGCTGAAAATCTGTCCTGGTACAAGGATGATGAGGCATGTGCTGCTCGTGCCAAAACAATTTCTTTGTGGTCCAAGTGAGTGAAATAAGAGGCCAAACAATGAAGATTATATACAGGAGAAAGAGAAGAAGTACATGCTGCCATTGGACAACCTGAAACTCAGAGATATCGAGAAGAGTTTCATGTCCAGCAAGCACGTGTTTGCTCTCTTCAACACTGAACAAAG

Function

symbol description
dnm1b Predicted to enable GTPase activity and microtubule binding activity. Predicted to be involved in receptor internalization and synaptic vesicle endocytosis. Predicted to act upstream of or within endocytosis. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including microtubule; plasma membrane; and synapse. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 31. Orthologous to human DNM1 (dynamin 1).

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0098884 postsynaptic neurotransmitter receptor internalization biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0048285 organelle fission biological_process
GO:0031623 receptor internalization biological_process
GO:0061025 membrane fusion biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0000266 mitochondrial fission biological_process
GO:0098844 postsynaptic endocytic zone membrane cellular_component
GO:0030424 axon cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0044327 dendritic spine head cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100920-3 Predicted to enable GTPase activity and microtubule binding activity. Predicted to be involved in receptor internalization and synaptic vesicle endocytosis. Predicted to act upstream of or within endocytosis. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including microtubule; plasma membrane; and synapse. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 31. Orthologous to human DNM1 (dynamin 1).

Ensembl:

ensembl_id ENSDARG00000009281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059701 False 2925 mRNA 0.50 23 63668735 63735611
TCONS_00059702 False 2577 mRNA 0.52 22 63668876 63737734
TCONS_00059703 True 774 processed_transcript 0.46 9 63694805 63720707

Neighbor

gene id symbol gene type direction distance location
XLOC_030586 rab14 coding upstream 268841 63390315 ~ 63399894 (+)
XLOC_030585 ttf1 coding upstream 281507 63359520 ~ 63387228 (+)
XLOC_030584 si:ch73-376l24.4 coding upstream 314989 63340637 ~ 63353746 (+)
XLOC_030583 si:ch73-376l24.3 coding upstream 328395 63322093 ~ 63340340 (+)
XLOC_030582 si:ch73-376l24.2 coding upstream 349233 63302660 ~ 63319502 (+)
XLOC_030588 CU856222.1 coding downstream 2129 63739863 ~ 63741137 (+)
XLOC_030589 si:ch73-274k23.1 coding downstream 11634 63749368 ~ 63765657 (+)
XLOC_030590 rgs3b coding downstream 29642 63767376 ~ 63864536 (+)
XLOC_030591 NA coding downstream 138474 63876208 ~ 63880022 (+)
XLOC_030592 NA coding downstream 495925 64233659 ~ 64236297 (+)
XLOC_030581 NA non-coding upstream 373792 63288277 ~ 63294943 (+)
XLOC_030580 CR339044.1 non-coding upstream 462267 63197955 ~ 63206468 (+)
XLOC_030579 NA non-coding upstream 654045 63013978 ~ 63014690 (+)
XLOC_030577 AL928675.1 non-coding upstream 781492 62887128 ~ 62887243 (+)
XLOC_030574 BX510960.1 non-coding upstream 964331 62699748 ~ 62704404 (+)
XLOC_030593 NA non-coding downstream 500608 64238342 ~ 64241354 (+)
XLOC_030594 NA non-coding downstream 534060 64271794 ~ 64274461 (+)

Expression


Co-expression Network