G1162396


Basic Information

Item Value
gene id G1162396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29541878 ~ 29543367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1325617
caaatgattgttttcctatggttgagaagcatattttgaaattcTGAGAtgagtgttgtttacaaaaggctaagcttgagagatggcttatttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgagtctgtattcacgataccggatccgggatggggagatcagagaggttaacatCTCTGGTACAaggtcccacctcgacaacagccagtgaaattgcagggcaccaaattcaaaacagaaaccccataattaaaattcctcaaacaagggcctcccgggtggcgcagtggttaagggtgctgtactgcagcaccagctgtgccatcagagtccctgggttcgcactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggataccacgaaattggggagaaaaaaaaaaaaaacattcctcaaacatacaagtacaaccattttaaagataacttcttgtaaatccagccacagtgtctgatttcaaataggctttactgtgaaagcacactttgcgataatgttaggtcagcgcctagacacagaaacccatacagccattttccaaccaaggagagtgtcacaaaagtcagaaattgcattaaaatgaatcacttacctttgatcttcatctggtggcactcccaggtctccatgttagacaataaatgtttgttttgttcgataaagttaatctttatgtccaaagacctccgttttgttggtgcgtttagttcagaaatccaaaggcacaatgcgctCTCAACTccaagacgaaaagtcaaaaaagtacaataaaagatagtagaaacatgccaaattatgtttaaaatcaatcctcaggttgtttttgtcatacataatcaataatatttcaaccggacaaaagttTAGTCAAtggaaaaggtaaacaagaaatacGCACTCCCGATCACGTGCTTGGTTCATGTCTGGAAATTCACTGTCCTCTCATTGAAAGTGCGGTATCTCCCTAATTTTTCAGAGAAAacgcctgaaacaatgcctaaagactggttatgttgaggaagccatagagatcgtgaactgggtcctagacccatctttgtatggtggataggctttcaatggaaaaacagactttcaaaataatagtacttcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1325617 True 1209 lncRNA 0.40 2 29541878 29543367

Neighbor

gene id symbol gene type direction distance location
LOC110486071 LOC106564807 coding upstream 56065 29444123 ~ 29485813 (+)
LOC110486070 hebp1 coding upstream 113312 29419363 ~ 29436445 (+)
LOC110486069 klc4 coding upstream 132405 29373301 ~ 29409473 (+)
si:ch211-126j24.1 LOC106585260 coding upstream 174130 29266618 ~ 29370947 (+)
rrp36 rrp36 coding upstream 369357 29168401 ~ 29172521 (+)
LOC110486077 LOC106564801 coding downstream 112189 29655556 ~ 29706148 (+)
ncx ncx coding downstream 298638 29842005 ~ 29894155 (+)
LOC110485133 LOC106608247 coding downstream 394883 29938250 ~ 30038173 (+)
LOC110486079 LOC106564790 coding downstream 496906 30040273 ~ 30122084 (+)
LOC110486080 LOC106584788 coding downstream 587470 30130837 ~ 30142410 (+)
G1162365 NA non-coding upstream 46039 29495252 ~ 29495839 (+)
G1162361 NA non-coding upstream 48752 29492592 ~ 29493126 (+)
G1161961 NA non-coding upstream 102960 29437799 ~ 29438918 (+)
G1162471 NA non-coding downstream 143175 29686542 ~ 29687002 (+)
G1162478 NA non-coding downstream 155680 29699047 ~ 29699261 (+)
G1162449 NA non-coding downstream 164570 29707937 ~ 29708562 (+)
G1162447 NA non-coding downstream 170168 29713535 ~ 29719133 (+)
G1162494 NA non-coding downstream 199848 29743215 ~ 29750349 (+)
G1162364 NA other upstream 46976 29494362 ~ 29494902 (+)
G1161908 NA other upstream 242222 29298758 ~ 29299656 (+)
G1159924 NA other upstream 722430 28818734 ~ 28819448 (+)
LOC110487355 LOC106561190 other upstream 1042672 28472333 ~ 28500669 (+)
G1162753 NA other downstream 287387 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1570944 31113781 ~ 31119681 (+)
LOC110486134 LOC106600876 other downstream 2458384 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 3171889 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 3685746 33001356 ~ 33230495 (+)

Expression


Co-expression Network