rrp36 (rrp36)


Basic Information

Item Value
gene id rrp36
gene name rrp36
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29168401 ~ 29172521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557384.2
CAGTGCCCCCCGTTGGTCGATTAAATATTGCACGGGAATCAGTCAGACtcagagtagctagctagctaacagtacacaaCTAAAACCCACGTGGATAACATCTTGGGCTGGTTGCTATTATAGTTCGTTTCTAAGTTAGGATCGTCGTTCATATAATGTCCACAATGTCCTCCGGGCACCAGAAAGCAACTATGAAGCGAAAGCAACATCAAGAAGTGGCTGTCACTGTGTCTAGGTTGGATAACAAGTCAAAAAAGACCAAAAGTCTGTCAAATAAAGCCCCTGACAGTAGTGGTGAAGACTCTGAACTGGAAGAAAACTTTGCCTTACTCAGTAAAAAGAGCTCCTCAGGTATGATCGAGGAAGACCAGGAAGAGTCTGAACGAGAGGAAGAGGAGTACAGTTTGAGTGGTGGAGAAGCTCTTGAGGATGCCAGTGAAGAAGAGGCTAATGATGAAAATGCAGAGAGTGATGGTGTTGACCAGACAGGTTTGGGTAGTGACACTGAGGACTCTGAGGATGTCGATGATGACGCAGAACAACCGGAATCGGTAAACAGCAGTGGTGAAATACAAACACAAGACGACATTAAAAAAGAGCTTTCAACAATGTCTTTTGAGGACATTATGAAGCTTCAAAACAAGGTGGGGACAAAGGTCTATAATGAAATAGCCTACGGAACAACCAAGGCAAAACAAACTCCCACAAAGAAACGCCTCAACAAGAATAGGCCCATGGAGATATCAGCCAAGAGGCCAGCCCCTTTTCTCAGACAAGTAGTTCCTGTCAAGAAATCAGTGTCAAGAGATCCTCGATTTGACGATCTGTCTGGTGAATACAAACCGGAGATCTTTGAGAAAACATACAGATTCATCAACGACATCAAACAGCACGAGAGAGATgtagtGCAGAAGAAGCTCAAGAAACCACTAAAGAGCAACCAAAAGAAGGAGAAACTTCAGTTCCTGTTGAAAAGAATGGAGAACCAGGAGCGGGCCCGGAAGAGCCGGGAACAGCAGCGTGAGAAGGAGCTAGAGTTCaagaggaagcagagagagatggcGGGCCAGGGACTGAAGCCTTTCTTCCTCAAGAAATCTGACAAGAAGAAGCTGGAGCTGGCGGAGAAGTACAGCGAACTGAAGAAGAGCGGCAAGCTGGAAAACTTCCTCAgcaagaagaggaagaggaatgcTGGCAAAGACCGCAGGAAGCTGCCTTTCCAGCAGAAGTGACTGTCCTGAAACTGGCCGAGGAACAGTCTTGCTCTTTTGTTTgtcctgatgatgatgatgatgatggtgggacATTTTGGTCTCAGAAGCTGTCCCAGCAACAATTTACACTGCTTTGTTTTTACTAAGGGCCAATCTACCCAGGGGCCGCTCTTCTATCTTGAGATTCATGTGAGTAACTGAACTGGTCTGAATCCCATTAACAATGTATGATTTATGTGAGAGTCTAAGATGCTTGCATGCATCTTAAGTTTGGACTGAGCCAATAAGGTTAGGAGAGGGCTGACAGAGACCGAAGGGCCGCATTCGCTTGGCTATCATGGCCATGGAGGTGTCCCATGGGAGAGGACTTAATCACAACTACGGTATATTATCTAGTACTTCATATCGTCTTCCCGTATTTGCTCACCGGCGAGGAATTTCTGAAAGCAGACTGTtgattttgtatgtttttatGAGGACTTCCAATACAAATACGTATGGTTTGTATTTATGATGTTATTTCATTGGAACATGCAGAAGGGTCATTTTTGTATTAAATATATACGTCATTGCCAATA

Function

symbol description
rrp36 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within cleavage involved in rRNA processing. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; immature eye; and midbrain. Orthologous to human RRP36 (ribosomal RNA processing 36).

NR:

description
ribosomal RNA processing protein 36 homolog

GO: NA

KEGG:

id description
K14795 RRP36; ribosomal RNA-processing protein 36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557384.2 True 1795 mRNA 0.45 8 29168401 29172521

Neighbor

gene id symbol gene type direction distance location
LOC110486062 LOC106585334 coding upstream 307796 28859535 ~ 28860605 (+)
LOC110485131 LOC106571816 coding upstream 393461 28768216 ~ 28774940 (+)
LOC118938260 LOC106593417 coding upstream 414922 28751512 ~ 28753479 (+)
LOC118938259 LOC106566139 coding upstream 446665 28716818 ~ 28721736 (+)
LOC110487366 NA coding upstream 454612 28707695 ~ 28713789 (+)
si:ch211-126j24.1 LOC106585260 coding downstream 94097 29266618 ~ 29370947 (+)
LOC110486069 klc4 coding downstream 200780 29373301 ~ 29409473 (+)
LOC110486070 hebp1 coding downstream 246842 29419363 ~ 29436445 (+)
LOC110486071 LOC106564807 coding downstream 271602 29444123 ~ 29485813 (+)
LOC110486072 LOC106585018 coding downstream 325541 29498062 ~ 29591905 (+)
G1161821 NA non-coding upstream 3164 29165036 ~ 29165237 (+)
G1161592 NA non-coding upstream 309295 28858872 ~ 28859106 (+)
G1161567 NA non-coding upstream 326804 28841377 ~ 28841597 (+)
G1161564 NA non-coding upstream 328718 28838493 ~ 28839683 (+)
G1159923 NA non-coding upstream 331781 28818272 ~ 28836620 (+)
G1161768 NA non-coding downstream 234 29172755 ~ 29173426 (+)
G1161822 NA non-coding downstream 4777 29177298 ~ 29177894 (+)
G1161823 NA non-coding downstream 6569 29179090 ~ 29179331 (+)
G1161825 NA non-coding downstream 9555 29182076 ~ 29182279 (+)
G1161833 NA non-coding downstream 23095 29195616 ~ 29195821 (+)
G1159924 NA other upstream 348953 28818734 ~ 28819448 (+)
LOC110513252 NA other upstream 469580 28338501 ~ 28698821 (+)
LOC110487355 LOC106561190 other upstream 669195 28472333 ~ 28500669 (+)
G1159684 NA other upstream 910427 28252530 ~ 28257974 (+)
G1159631 NA other upstream 1042763 28119665 ~ 28125638 (+)
G1161908 NA other downstream 126237 29298758 ~ 29299656 (+)
G1162364 NA other downstream 321841 29494362 ~ 29494902 (+)
G1162753 NA other downstream 658233 29830754 ~ 29831296 (+)
LOC110486104 chchd5 other downstream 1941790 31113781 ~ 31119681 (+)

Expression


Co-expression Network