G1165355


Basic Information

Item Value
gene id G1165355
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32182733 ~ 32184968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1328958
agtgactttgaaaaagtaaggaaacataaacaaaaaaacatcaacaaatgttttaggtaaccagttgcatatttgagatcacaagatgacaaaggtatagtttgagcaaagtaaagcttgaattttgagcatgacaaattcgtgatggtacctgccctttaaaacatattgcaaatgcacagtgactttgaaaaagtaagaaacaaaaaaaatacatctaaaaaattttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatc
>TU1328961
agtgactttgaaaaagtaaggaaacataaacaaaaaaacatcaacaaatgttttaggtaaccagttgcatatttgagatcacaagatgacaaaggtatagtttgagcaaagtaaagcttgaattttgagcatgacaaattcgtgatggtacctgccctttaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacaaaaaaaaaatacatctaaaaaattttgagcatgacaaatttgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatgttgggtaaccagctgcatattttagatcacaagcttgaattttgagcatgacaaattcgtgatggtacctgcccaataaaacatattgcaaatgcacagtgac
>TU1328962
agtgactttgaaaaagtaaggaaacataaacaaaaaaacatcaacaaatgttttaggtaaccagttgcatatttgagatcacaagatgacaaaggtatagtttgagcaaagtaaagcttgaattttgagcatgacaaattcgtgatggtacctgccctttaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaagatacaaaaaaaaatacatctaaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatatt
>TU1328960
gtatagtttgagcaaagtaaagcttgaattttgagcatgacaaattcgtgatggtacctgccctttaaaacatattgcaaatgcacagtgactttgaaaaagtaagaaacaaaaaaaatacatctaaaaaattttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1328958 False 325 lncRNA 0.31 2 32182733 32183884
TU1328961 False 530 lncRNA 0.33 3 32182733 32184968
TU1328962 False 350 lncRNA 0.32 2 32182733 32184368
TU1328960 True 231 lncRNA 0.32 2 32183189 32183884

Neighbor

gene id symbol gene type direction distance location
LOC110486134 LOC106600876 coding upstream 23569 32001741 ~ 32159164 (+)
il2rb2 il2rb2 coding upstream 472993 31701964 ~ 31709740 (+)
LOC110487528 tex33 coding upstream 490465 31691533 ~ 31692268 (+)
LOC110486131 LOC105029658 coding upstream 492528 31684474 ~ 31690205 (+)
LOC110486130 LOC106607449 coding upstream 508843 31666240 ~ 31673890 (+)
LOC110486136 cdc27 coding downstream 83248 32268216 ~ 32289324 (+)
LOC110486139 LOC106607458 coding downstream 105373 32290341 ~ 32370648 (+)
LOC100136790 scn4aa coding downstream 277243 32462211 ~ 32505925 (+)
LOC118938569 NA coding downstream 297570 32482538 ~ 32482591 (+)
gh2 gh2 coding downstream 340269 32525237 ~ 32528851 (+)
G1165325 NA non-coding upstream 21729 32160294 ~ 32161004 (+)
G1165223 NA non-coding upstream 28557 32153951 ~ 32154176 (+)
G1164993 NA non-coding upstream 263693 31918748 ~ 31919040 (+)
G1164619 NA non-coding upstream 371734 31718603 ~ 31810999 (+)
G1165356 NA non-coding downstream 510 32185478 ~ 32236850 (+)
G1165411 NA non-coding downstream 66338 32251306 ~ 32251520 (+)
G1165418 NA non-coding downstream 78295 32263263 ~ 32263859 (+)
G1165475 NA non-coding downstream 321924 32506892 ~ 32508136 (+)
LOC110486104 chchd5 other upstream 1063056 31113781 ~ 31119681 (+)
G1162753 NA other upstream 2351437 29830754 ~ 29831296 (+)
G1162364 NA other upstream 2687831 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 2811786 29266618 ~ 29370947 (+)
ifn2 ifn2 other downstream 530288 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 1044145 33001356 ~ 33230495 (+)
G1166318 NA other downstream 1054985 33239953 ~ 33249208 (+)
G1166779 NA other downstream 1605672 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 2496220 34680909 ~ 34687670 (+)

Expression


Co-expression Network