G1166318


Basic Information

Item Value
gene id G1166318
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33239953 ~ 33249208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1330025
TGACAACTCTACTCTTTATGGCATTAGCTCATCGAATGGTGTTATCTTCATTGGCAGCTGGTGAAGAGATCAGGCTGGTCGATGGCACTAGAAGCTGCTCGGGGACAGTAGAGATTCTTTACAAGGGCCAGTGGGGACGAGTGTGTGGCCAGAAGTGGGACGTAAACGATGCCAATGTGGTGTGTGGCCAGCTGGGCTGTGGGAGAGCTGTGAGTGCCCAAGGTAGTGCCCACATAGGTCAGGGTAGTGGTGGCAGGCCTACTTGGCTGGATGATGTTGGGTGTAAAGGCACTGAGAGCTCCCTCACAGAATGCTCACATGGAGGATTGAAACACCATGACTGTTTACAGGCTCAAGATGCCAGAGTTGTCTGCTCAGTTAAACCTAATATCAGACTGGTCAATGGGAGTGACCTCTGCTCTGGGAGGGTGGAGGTCTATCAAACTGGTCACTGGCGAACCGTGTGTGACGACGTGTGGGACTTGAATGATGCTGCTGTGGTTTGCAGACAGCTTGGCTGTGGGAGAGCTGATAGTGCCCCAGAGAGGGCCTACTTTGGTCAGGGCAGTGGGCCCATCTGGCAGGATGATGTTGGCTGCTCTGGCACAGAGTGCTCCATCACACAGTGCCCACACACAGG
>TU1330027
CTTTTTTCTCTTTGTGAGCTGGTGAAGAGATCAGGCTGGTCGATGGCACTAGAAGCTGCTCGGGGACAGTAGAGATTCTTTACAAGGGCCAGTGGGGACGAGTGTGTGGCCAGAAGTGGGACGTAAACGATGCCAATGTGGTGTGTGGCCAGCTGGGCTGTGGGAGAGCTGTGAGTGCCCAAGGTAGTGCCCACATAGGTCAGGGTAGTGGTGGCAGGCCTACTTGGCTGGATGATGTTGGGTGTAAAGGCACTGAGAGCTCCCTCACAGAATGCTCACATGGAGGATTGAAACACCATGACTGTTTACAGGCTCAAGATGCCAGAGTTGTCTGCTCAGTTAAACCTAATATCAGACTGGTCAATGGGAGTGACCTCTGCTCTGGGAGGGTGGAGGTCTATCAAACTGGTCACTGGCGAACCGTGTGTGACGACGTGTGGGACTTGAATGATGCTGCTGTGGTTTGCAGACAGCTTGGCTGTGGGAGAGCTGATAGTGCCCCAGAGAGGGCCTACTTTGGTCAGGGCAGTGGGCCCATCTGGCAGGATGATGTTGGCTGCTCTGGCACAGAGTGCTCCATCACACAGTGCCCACACACAGG

Function

NR:

description
uncharacterized protein LOC109897268

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1330025 False 640 TUCP 0.54 4 33239953 33249208
TU1330027 True 601 lncRNA 0.55 2 33248468 33249208

Neighbor

gene id symbol gene type direction distance location
LOC110486146 LOC106607468 coding upstream 17973 33001356 ~ 33230495 (+)
si:dkey-283b1.6 NA coding upstream 402572 32843296 ~ 32845896 (+)
LOC110486141 LOC106607465 coding upstream 405369 32826492 ~ 32843099 (+)
LOC110485150 LOC105907864 coding upstream 422445 32825222 ~ 32826023 (+)
LOC118938068 NA coding upstream 423933 32820046 ~ 32824535 (+)
LOC110486149 LOC106600856 coding downstream 24 33249232 ~ 33255122 (+)
LOC110486148 LOC106607470 coding downstream 21871 33271079 ~ 33284807 (+)
LOC110485152 LOC106607471 coding downstream 47550 33296758 ~ 33304976 (+)
LOC110486150 psd3 coding downstream 71427 33320635 ~ 33327034 (+)
csf-3 csf-3 coding downstream 86239 33335447 ~ 33339727 (+)
G1166240 NA non-coding upstream 121075 33088583 ~ 33127393 (+)
G1166242 NA non-coding upstream 149975 33097845 ~ 33098493 (+)
G1166239 NA non-coding upstream 160622 33087515 ~ 33087846 (+)
G1166237 NA non-coding upstream 164675 33083571 ~ 33083793 (+)
G1166235 NA non-coding upstream 167223 33080907 ~ 33081245 (+)
G1166354 NA non-coding downstream 58311 33307519 ~ 33307823 (+)
G1166357 NA non-coding downstream 63679 33312887 ~ 33313192 (+)
G1166364 NA non-coding downstream 69991 33319199 ~ 33319408 (+)
G1166369 NA non-coding downstream 83201 33332409 ~ 33332663 (+)
ifn2 ifn2 other upstream 526006 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1137735 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 2128791 31113781 ~ 31119681 (+)
G1162753 NA other upstream 3417172 29830754 ~ 29831296 (+)
G1166779 NA other downstream 541432 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 1431980 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2740648 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2918420 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2920688 36169896 ~ 36171571 (+)

Expression


Co-expression Network