XLOC_030825 (spef2)


Basic Information

Item Value
gene id XLOC_030825
gene name spef2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8355647 ~ 8406192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059968
AAGCCAAAACGAGACACtcccaaaaacaaaatgaacgGCACCGCTTTCTAGATTATTCTCgcataataatataaacataattgAATTAACTGAAGATAATAAACGTTCAGAATGTCAGACATTATCTGTCAGTGGCTGAATTCAGAGCTCCGGCTGTCAAAAGTCGTCGAGCCGCATTCATTTGCCAGGGATTTTTCAAACGGTTATCTGATAGGAGAGATCCTCTACAGATATGAGCTACAAGACGATTTCCATCTGTTCTCAAAACAAAACACATCGAATGCCAAGCTAAATAACTTCACTCGCATTGAGCCCACCCTGCAGCTGCTGACCGTGCCCTTTGATCTGACCATGGCTAAAGCGGTGATGCTGGGCAGGCATGGAGCGGCCACTCGCCTGCTGTACCAACTCTACATACTCCTGCAGAGAAAGAAGAGAGCAGGACTCACTGCCACAGCCATGGAGGTCATGCAGCCTGCAGCCACGGCCCGCCTACACCGCATAGAGAACAGCATCTACACTGAGCGCTTGAAAACAGTGGTGAAGCGTGAGGCGGATCTGAAGATGCAGAAGATCGCAAAGCGCTTTCATAAAAGAGGGCAAGAAATGTTCAGCCGCTCAGTGATGACTGAATTGCTGAAGGAGGAGGACCGGCTCAAACGCCAGGAGGAGAGAAGACTGAGGGACATAGAAAAGCATCGGCAGGCACGCAGAAAACAAAATGAGATTATGATTCAGATCCAGTCGGCTGTTGTTCAGATCCCAAAACCTCCACACATTCGCACGTCAAGAGCTTCAGAGAAACAACAGCAGTTTCGCAAAAAGCAAGAAGCTCAGCATGTTCATCGTGAGATAGCAcagtttgagaaaaaaaagaagaccACTTCTCCTCCTGAAGGTGGAGCTTTACTCTTCAGTGGTCGTGTGACACAGCCGATGAGTACAGGAGACAAAGCTCAGTGGAACAAGGACTACATCGAGAACATCCGTCAGCGTCTGGAGGAAGACGCCACTGCACGGGAACAGAGAGAGATGAGGAGACGCCGAGCGCTGATGGAGCAACTGCAGGCTCACGAGGCTCAGCAGGAGGCATTGCGAGAAGAACAAATGGTCAGCCGACTGATGCGTCAGACACAGCAGGAGAAAAGGATCACAGTTCAGCTGATGCAGATTAAACAGCAGAAAGAGGTGCTTCGAGAAAACCGCATCTTTCAGGAGAGACAATACCAGGAACGCCGCCAACGAGACTTTCAGGAGGCCTTGGATAGAGAAGCTGTTCTCGCTCAGCAGGAGCGTCTGGAGCGCAGTGAACAGCTCAGGATAGAGCATGAGCTGCACAAACAGCTGGCTGAAGAGCGCGCTCAAGCTCGATATCAGAAGCACTTTGGTATCTGCAGGGACATTCTGGGACAGATTGTTGATCTGGCAACCAAAGCTGGAGAATATCGACTTCTCACTGCCAATCTGATACCAGTGAAGCTGATGCAGGAGTGGATGGAGCTGTTTTACAGTGGGAAGCCGCTGTATGAAGTGGCCTGTGTGGATCCTAAACCTACTGAACCCACACCAGAGCAGATCATTGAGCTTGAGAAGCTCCAGATACTCAACAATCAAGACTACGATGAGTATGTGGCCATGATAGGCGAGTGGGCTTTAGATGAAGAAACCGAGAGACAAACCAATGCAGGGAATAGTGATATTCTGGATCATGTGTTGAACCGTCTACGGAACATGATTGTCCCACCCACCGTCAGCACTCCTCCTCCTCTGTTTCCCCGTTTCACCATCAGGGCATGCATGCTGGGAAAAACCTTCTCTGGCAAAACCACCTGCCTCTCCAGGATCAGCAGCACTCTTAACATCCATGTACTCTCAGCCAACACTTTGATCCAGGACGCTTTATCAGCCTATCAGCAGGAAAAACAGGCTGCAAGCGAAAGCCAGAATGAGAAGAGCTTGGAGAAAAATGTTTCTCAGACAGAACATACTACAGAACAGCTTCAGAAAGATGAGCAGGAGACATCCTCTCCTCTAGAATCAGGACCACAGCCTCATGAGGCCTCATCTGGGCTTCATGAAAAAGAGGACAAAGAAGAATCAAAGGCAATCCCAAAGTGGTCATCACGAGCACAGCACGGTGCAGCGGTAGAGAAAGTTCTGAGGACAGGCCAAGCTGTTCCTGATCAGCTTCTGGTGGACATTATTGTGGATGCTATCAGGAACATTCCTGCAGATAGTGGCTGGATTCTTGATGGCTTCCCGGTGGACATCAGTCAGGCTCAGATGCTTGAGAAAGCTCTAAACATGACTGAACTTGAtggaacaaaaacacaaaataatttgtccACAAACAAAAACGGCCCTAAAGATGCGGCTCCTCCATCCCCTGCTCTAGACCTAGTGGTGCTGTTAGACGTTTCAGATGAGCAGGTTCTGGAGCGAGCCACAACTCAGCCTCCTGAGGGAACACAGATAGTGAATGGAGAAAGCATAAAGCAGGAGAAAGGCAGCAGTGATGCTGCGGAGGAAAACACAAGCATGCCAGATCTGAACACACAAGATCCTGAATCCTTGTCTGACGACAAAAGCCTGGGGAGGACACAAATACAGTTCAgAATCAGTGGCTTTCATCAAACATGGCCAAAACTGGAGAAGTGGTTTGGTGATCAGCAGAATATTCTGGTGAAAGTCACAGCAGGTGTGGACAAGGACACTCTCTTCAGTAACGTGGAGACTATTCTGAGGGACACTATTGAGTCTGTTGAAAAAGGAGCAGCTCTGGCTGACTCCAGGAGAGCTTCAGTGACCTCCACACCTGAACAGACCCGTCCAGAAATGATGCAGAATCTCCGTGGTGAACGTGAGCTCATCATTCATCACCTTTACAACATCCGGGAGAACTTCAGGCAGTATCTACAGAAGCCGGATCTGAAGCAGGAGTTTGTTAGCTCATGGCAGCGAGATTATAACAGTGTTCCTGATAACATCAGAGAGGACGAGGAGACCAAAGGAGAGCTTCATCAAAGGCTGGATGACTTGCGTGAGCGGCTATGGGACATCAGTGATAAGCGTAAAGACGAGGCAGAGCAGGAGAAAGCAGGCGTCATTCATGATGGCTGGTTAGAGGATCACACCGCTGTACTAATCAACAATTATTCTGCATTGATGCAgaTAGAAGTGGGCCGATTTCAGGACTGTGTGTGTCTGCTGAAAGATTATTATTCAACGATGGGTAAAACAGCCTTTGAATCCAAATGTGACTTTGCTCGTGTCCCATTGCTTGACATCACCGCTGATCAGCATGTCGACGAGTCGAAAATCTCTGAATCTGCTCCGTCAGAGAAATCTGTAAAGAATGCTGAGGAAAAAGACTCTGAAATTGTGGACAGGATGAAAACTAAAGTATCTCCAACTTCTGAGATCCTCAAACAGCCTTTGCATCAGGCTGATGAGAACCTGCTGCAGGAGTTCTTCCAAGCAGCAATCGCCATCTTCAGGAGCATGGTGTCGGCAGAGACGCGGCAGTGGGATGAAGAAGAAGTTGATGAAGACCAGAAGCAGATGGAGGCACAGAAAGCTCAAACTTTGACCTCTGCTACAGACGTAAGGAAAGCAGGAAAACAAAAAGGtgctccacctcctcctcctccagagCCCAGTCCTCAACCTGCTGCAAGGAACCCAGAGGAGCTCAGGAAGAGAGCGGAGAAGAAACGATTCAAACAGGAGCTCTCAGCTGCACTTAAACCTGAAGTGAAGGCTCATGGGCTGAGAACAGTCATCAGTCTGCAGCACAAAGCAGAACAGGTCTATAGGAACATGGAGGAGTGGATGAAAGCCCGCTATCTGGCTGAAATGAAAAGTATCGACCAGCTGACAGATTTGGTGAGGCAGCACATTGAGACTGGAGTTCAGATCCGTCATGAGCTGGTTCTGCAGAGCACTGATTTCTGTGTGGATGGAGACACCCGTGTGCTGTTGAGTCCAGAGCTTACTCCGCGCCGATCCCTGCTGGAGCAGCCTAAAAACAGCACACTCACAGTACAACAGCTGCACGTCCTCTGCACACAGTTGCGCAAGATCGCCCCTAAAGGTCTGATGTGTAGAAGTGAGCTGACTGAAGCTCTACACGAATTAACCTCTGCTCACATGGGTACTGATGTCCTTCCTGAGGCCTGGATGCACATCACTCCTTCACAGGTTGAGGAGCTGGTGTGTATTCTAGCTCAGGACTCTGAGATGTTGGACTGGCGTCAGTTTCTGCTCAGTGCTGCTCTGCCGTGGCCATTTCCCACTCAGACTCAGCTGATAAAAACCCTCCAGCGCTACAGAGACATCGACACCGCGGAAACCGGACTCATCACACAAGAACAATATGAACAGGTTGAATTATGGTTTCCCAGTGAACAAGATCCTTCTGTCCCTGATGACCCAACTGAACCCGTGCCCTATGACAGATTGGCCAACCTTAAAAAGtttttcttCAGTCTGTTTGCGAGCACACACTCCTCACCACTGCTGCTGGACTATCTGATGATGCTGCTTCATTTCTGCTGCCATCCTGAAGCAGCTCAGGGCTTCACCAGAGCGCTCGGCCTCGTCACCGGACACACACTGCACTACAAACACACCACCCCACTCACACAGTCTGTGCCGTGTCTGGAGGGCGCTGGAGTTGTGGATGATGCTGGTGCTGATAATGAAGAGGAGCAGCACAGAGGGGTGGAGTCTGAGGAAGTGGGCGTGTCTGTTGATGATGTGCTCAGAGTTTTGAGTCATGGAGAGGATCTCGTCTTACATCTAAACCGCTTCCAGCTTGTCCACAGGAGCAGAGATGAACTCCGAGAGGAGCTTCTGAAGGTGTTTAAGGACTTGGGTTTCAGTGGTGAAGAGAAGATTCCTTTCTCCACACTATCTCAGCATCCCTTTCTGCAGGACCTGATAGAAGGATCCGCCTATTATCTGCTCCATGACATTCACAAAATTTTCCAGACAAAACAAACTGAAGATTCGAGAAGTTTCTCAACATGATGAACACTCAAAACAACACACATCAACACCTGTATGACAGAAGGTGCACGCTAGTAGAATTATACAGTAAACGTAAGTAATACAACATTAAATCTATATTTGCtatattaatagttttattcattATAATTTACATCTAAATTCATCATGAAAACACAAAGAACAGTGGTTTACTGAAATGCACCATTGTTGAAATGTTTCTAAATGTATTTTCTGTTGTGATGATACACATTGTCACGACAATTATATTGCCTCATATAATATTGTCTCGTATTACAGCAGTTCTGTCAAATCAATCAATATACTGTATTTGTGTAGAAGCATGAACATGATCCTTTACTAAGGACAACGCTGAATAATAAATCTATGTAAAATCAACATGAAACATCAGCacaaatgtaaagtaaaaaaaatatgaaattgaGAGAATGATTTATGGTAAATGTGTATGTTTAGACATAGATATGAATACACAAGTCTGTAAAAAAAAGATAGAATACacgataa
>TCONS_00059969
AGTGGTCATCACGAGCACAGCACGGTGCAGCGGTAGAGAAAGTTCTGAGGACAGGCCAAGCTGTTCCTGATCAGCTTCTGGTGGACATTATTGTGGATGCTATCAGGAACATTCCTGCAGATAGTGGCTGGATTCTTGATGGCTTCCCGGTGGACATCAGTCAGGCTCAGATGCTTGAGAAAGCTCTAAACATGACTGAACTTGAtggaacaaaaacacaaaataatttgtccACAAACAAAAACGGCCCTAAAGATGCGGCTCCTCCATCCCCTGCTCTAGACCTAGTGGTGCTGTTAGACGTTTCAGATGAGCAGGTTCTGGAGCGAGCCACAACTCAGCCTCCTGAGGGAACACAGATAGCAGGAGAAAGGCAGCAGTGATGCTGCGGAGGAAAACACAAGCATGCCAGATCTGAACACACAAGATCCTGAATCCTTGTCTGACGACAAAAGCCTGGGGAGGACACAAATACAGTTCAgAGAATCAGTGGCTTTCATCAAACATGGCCAAAACTGGAGAAGTGGTTTGGTGATCAGCAGAATATTCTGGTGAAAGTCACAGCAGGTGTGGACAAGGACACTCTCTTCAGTAACGTGGAGACTATTCTGAGGGACACTATTGAGTCTGTTGAAAAAGGAGCAGCTCTGGCTGACTCCAGGAGAGCTTCAGTGACCTCCACACCTGAACAGACCCGTCCAGAAAGTGCCTGCTCTTCCAAATCTTCCCGAGCTACCCCAAAATCTGCTAGAAGAAGCTTTGCGGAGGAACCTTTACCCAAGGCACAACCACACACAGAACACACCTGCCCTCAGAATACTGACAGATGCTGATTAAACATGAGAAA

Function

symbol description
spef2 Predicted to be involved in sperm axoneme assembly. Predicted to be active in manchette and sperm midpiece. Human ortholog(s) of this gene implicated in spermatogenic failure 43. Orthologous to human SPEF2 (sperm flagellar 2).

GO:

id name namespace
GO:0007288 sperm axoneme assembly biological_process
GO:0097225 sperm midpiece cellular_component
GO:0002177 manchette cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-47 Predicted to be involved in sperm axoneme assembly. Predicted to be active in manchette and sperm midpiece. Human ortholog(s) of this gene implicated in spermatogenic failure 43. Orthologous to human SPEF2 (sperm flagellar 2).

Ensembl:

ensembl_id ENSDARG00000098330

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059968 False 5538 mRNA 0.47 36 8355647 8406192
TCONS_00059969 True 847 processed_transcript 0.49 5 8381704 8388178

Neighbor

gene id symbol gene type direction distance location
XLOC_030824 NA coding downstream 30632 8317718 ~ 8325015 (-)
XLOC_030823 slc1a3a coding downstream 184022 8111350 ~ 8171625 (-)
XLOC_030822 nipbla coding downstream 259415 8005911 ~ 8096232 (-)
XLOC_030821 FP016143.1 coding downstream 382768 7972759 ~ 7972879 (-)
XLOC_030820 EGFLAM coding downstream 385887 7919878 ~ 7969760 (-)
XLOC_030826 NA coding upstream 3269 8409461 ~ 8416833 (-)
XLOC_030827 lifra coding upstream 10992 8417184 ~ 8483537 (-)
XLOC_030828 rictora coding upstream 127737 8533929 ~ 8614217 (-)
XLOC_030829 fyba coding upstream 210475 8616667 ~ 8636168 (-)
XLOC_030830 BX897662.1 coding upstream 229076 8635268 ~ 8635392 (-)
XLOC_030818 NA non-coding downstream 630372 7725064 ~ 7725275 (-)
XLOC_030816 CABZ01069879.1 non-coding downstream 722828 7632695 ~ 7632819 (-)
XLOC_030814 CU856253.1 non-coding downstream 924124 7431425 ~ 7431523 (-)
XLOC_030831 BX897662.3 non-coding upstream 231612 8637804 ~ 8640000 (-)
XLOC_030832 NA non-coding upstream 234486 8640678 ~ 8644183 (-)
XLOC_030836 BX897662.2 non-coding upstream 316736 8722928 ~ 8723043 (-)

Expression


Co-expression Network