XLOC_000031


Basic Information

Item Value
gene id XLOC_000031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1358731 ~ 1360831 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003010
CAAAATCAACATTTACAATCTATTTACACACAAAAAGTGTCACGTTTGGGTTCTCGAATCGTCCATCCTGATGTCAGATCGCTGTAAAGTGAGTTCAGAGTCTGCAGAAGCTCTTAAAGAAACTCTTCTGTTGAAAATGAGATGTAGATTTACTGATCAATTCAAGCAGTTCGCTGACTGCCACCATCATGTCActtgtgtttttgtcattttaacatGCTGTTTTGCATCGGTGTGAGTTTTAGACTCGAAACAAACTCTACAGAAGATCAGAAAGGCACACGCTTAACGATATGCAAGCTACAAAGTAAAAGAAAGCCAAGTGATTATATAAATGTCATcagtttaaacattattatttttgtatagtTTGCATAGTGGTTATAactgtggcttcacagcaagaagCAGAACTTACTATTTACTATATTCAATTAAAGCTATTTTGCATTTATATACCAAACTGGAGATCAactgatattatttttattaatggtcTGAAATATGAAATTAATTTAGTCAAtaagcagcaataaataataattaggaaaaacattcattcattttcttgtcggcttagtccctttattaa
>TCONS_00003011
CAGTTCGCTGACTGCCACCATCATGTCActtgtgtttttgtcattttaacatGCTGTTTTGCATCGGTGTGAGTTTTAGACTCGAAACAAACTCTACAGAAGATCAGAAAGGCACACGCTTAACGATATGCAAGCTACAAAGTAAAAGAAAGCCAAGTGATTATATAAATGTCATcagtttaaacattattatttttgtatagtTTGCATAGTGGTTATAactgtggcttcacagcaagaagCTTTGCAAATTCACCTCAACCTGAATGAAACCTGAAGTAGCATATTTGTTTgtgatgaataaat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003010 False 592 lncRNA 0.33 2 1358731 1360451
TCONS_00003011 True 306 lncRNA 0.36 2 1358897 1360831

Neighbor

gene id symbol gene type direction distance location
XLOC_000030 NA coding upstream 16494 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 coding upstream 139926 1218691 ~ 1218805 (+)
XLOC_000028 NA coding upstream 325093 1015812 ~ 1033638 (+)
XLOC_000027 n6amt1 coding upstream 387780 961607 ~ 970951 (+)
XLOC_000026 NA coding upstream 447180 794976 ~ 911551 (+)
XLOC_000032 NA coding downstream 211016 1571847 ~ 1578251 (+)
XLOC_000033 urp2 coding downstream 239148 1599979 ~ 1614500 (+)
XLOC_000034 NA coding downstream 256372 1617203 ~ 1619314 (+)
XLOC_000035 atp1a1a.4 coding downstream 328944 1689775 ~ 1706159 (+)
XLOC_000036 atp1a1a.1 coding downstream 351309 1712140 ~ 1796832 (+)
XLOC_000024 dre-mir-155 non-coding upstream 782210 576444 ~ 576521 (+)
XLOC_000043 NA non-coding downstream 640885 2001716 ~ 2005632 (+)
XLOC_000044 NA non-coding downstream 662578 2023409 ~ 2023645 (+)
XLOC_000049 CR352215.1 non-coding downstream 914774 2275605 ~ 2275742 (+)

Expression


Co-expression Network