XLOC_003116 (timp4.2)


Basic Information

Item Value
gene id XLOC_003116
gene name timp4.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 705727 ~ 711032 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006157
GCAGATCTGCAGAGACGCGGAGGTGAACAGTCAGAagtgaagatgatgaagatgaagatgtaTGTGTCTGCAGGTCTGCTGttcttcatgtgtgtgtgtctgaatgagcAGATGCTGGAGGCCTGCAGCTGTATCCCCTTTCATCCACAACAGGAGTTCTGCTATTCGAGTGCTGTGATTAAGGCTATGGTACTTGACGAGGAGCCCATACCTGGCCAAGACCCCGAAGAGATAAAGTACAAAATCAATGTGCTCCAGGTGTTCAAGGGCGCTGAGCATGCAGGAATCGAGTATTTACACACAGCTAGTGACGGAGCGATGTGCGGTATCCGCCTGAGACCTGGCATTTATCTGCTCGCAGTGAAAGGTGTGTATGTTGGACTGTGTGACCTTGTGGTGCGTTGGGACAATCTCTCCAAAACCCATAAAAAAATCCTCAGCTTAGGTCAGGAAGCCTGTGACTGTAAGGTCAGTCACTGCTTTAAGGAGCCCTGTGATGAAAACAAGTGCTACTTGACAGACATGTTTGATTCGGTGAAGCTGTACTCAGAGTCGATCTGCATGGCCAACAGCACCGGCTCCTGCAGATGGATCAATGCATACTAATGCTGAAGAGCAACGGGAAAAACGATGCCTGAAGTAGAGTGTGTGAGGCGTTCAGCAGCGGAAATAGAGGCTGTTTTGGCTTTTGAGAAtgcttaaaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcagctttttcatgcataataaaatgaacacaAGCGTTTTGTCAAGCTTTGCTATGCTTTAGAAGTACACACAAAGTCTGTTTGTCTGCAGATTtgcttaaaactattaaaatgttttgcATG

Function

symbol description
timp4.2 Predicted to enable metal ion binding activity and metalloendopeptidase inhibitor activity. Predicted to act upstream of or within negative regulation of peptidase activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in nephroblastoma. Orthologous to human TIMP4 (TIMP metallopeptidase inhibitor 4).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008191 metalloendopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-61 Predicted to enable metal ion binding activity and metalloendopeptidase inhibitor activity. Predicted to act upstream of or within negative regulation of peptidase activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in nephroblastoma. Orthologous to human TIMP4 (TIMP metallopeptidase inhibitor 4).

Ensembl:

ensembl_id ENSDARG00000102617

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006157 True 940 mRNA 0.41 5 705727 711032

Neighbor

gene id symbol gene type direction distance location
XLOC_003115 timp4.1 coding upstream 4422 691734 ~ 701305 (+)
XLOC_003114 mkrn2os.2 coding upstream 116599 583142 ~ 589128 (+)
XLOC_003113 mkrn2os.1 coding upstream 124894 575665 ~ 580833 (+)
XLOC_003112 NA coding upstream 161533 543348 ~ 544194 (+)
XLOC_003111 raf1b coding upstream 165475 506465 ~ 540252 (+)
XLOC_003117 timp4.3 coding downstream 3354 714386 ~ 718748 (+)
XLOC_003118 FQ311892.1 coding downstream 19775 730807 ~ 730923 (+)
XLOC_003119 vgll4b coding downstream 58591 769623 ~ 772459 (+)
XLOC_003120 tamm41 coding downstream 68722 779754 ~ 790304 (+)
XLOC_003121 vgll4b coding downstream 96121 807153 ~ 815216 (+)
XLOC_003250 BX324177.11 misc downstream 10634771 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10661854 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10675330 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10707001 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10718361 11429393 ~ 11429689 (+)
XLOC_003109 NA non-coding upstream 200898 474380 ~ 504829 (+)
XLOC_003110 NA non-coding upstream 211194 489935 ~ 494533 (+)
XLOC_003107 CR855375.1 non-coding upstream 334287 371322 ~ 371440 (+)
XLOC_003104 NA non-coding upstream 406628 298450 ~ 299099 (+)
XLOC_003126 AL935272.1 non-coding downstream 835085 1546117 ~ 1546231 (+)
XLOC_003132 NA non-coding downstream 1224652 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 1240599 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 1479589 2190621 ~ 2190730 (+)

Expression


Co-expression Network