XLOC_003113 (mkrn2os.1)


Basic Information

Item Value
gene id XLOC_003113
gene name mkrn2os.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 575665 ~ 580833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006152
GGTAATTAAATAATAGTCTAAATATTtatcgttaacttccggccgcggCTGTATCTCTTCTAGCAGCAAGAGAGCTCCACAGGTGAACGCAAATGGAGGAAACCGTCATCAAGTACATACATTGTGGAAGAAGCATTTACAGTTTCTCGTGTCCGAACGGCGGATATTCTGAGAGACCTGGAGGAGCCGCTCGTCAGTGTCCGATCTGTCTTCAGATTCTCACTTTCGGGCTTTTAGACGCCCCGGTGTGTGTTCCCTGTCCGCTTAGGAATGGACACCAAGTTTCCTGCGCGTTTCTGATAGGATCTGCGCACGGGCCCTCACATCTGGGAGAGTGGCAGGACTCAGAGATCCATGTGGGCCTGTCAGATTCAGCAGGTCTGGTCTACAACTACACACTGTCCGGGGTCCAGCGGGATGATCGCGGCTgggaacagtgtgtgtgtgtgcagctcgtCCCTCCGTCGAGACCTGAGCTCCGGGAATTATGGGATACACACCTCCAGCTGTTTGCCCTGCTGCCAGAATGGGCTTCAGAGCGGTTTGAAGAGGAGCGTGAGTTCGGCTCCTGCTGCTATGGCTTCGCTCTGACCTTCATAAACCGCATGCGTTCACTGGACAATAAAGACTGTCTGAGCAGAGATGAGTTCACTGGACGGTACATCTTACCCCGCATGAAGACCGTGTCCCTTTACATCAGCATCTACCAGACGATATTACAACACGGCTTTCACATAGCTAATACAGCGGATGACGAGTgatacttcattcattttccttcagcttagtctcttattcatcaggggtcaccacagcagaatgaaccgccaactattccagcatatgttttacgcagtggatgcccttccagctgcaacctagaactgggaaacacccatacaca
>TCONS_00006153
aTGCTGGCAACTTGgtaatttgtgctagaatcatgttaagaacatgctaattcatactagaatcatgctaacaacatgctcacttatattagaaacatgctaattcatactagattcaCATATTAATTCATGCTTTGCTAATTCATGGTAACATCATGcaaacattatgctaattcatactagaatcatgataAAAACAAAGTCATGCTAGAAACAGGCTAGCGGCTTGTTAATTCATACCAGaaacatgcttattcatactaGATTCATGGTATCAACATACTAATTTACTAgaatcatgttagaaacatgctaataataTGCTAGTTCATAGTAGAACCATGCTACCAACATTAAGAACattctaattcatactagaatcatgctaacatcatgttaattcatgctagaaacatcctAGAAAGttgttaattcatactagaatcatgttcaaaacatgctaattcatactagattcatgttaacatgctaattcatactagagttgtgctaacatgctaatttatactaaaacttgctagcaacatgctaattcatgctaacatgctaaaagCATGCTAGGAACATACTAATTCAtataagaatcatgctactagcatgctaatttatactagattcatgttaacatgctaatttatactaaaaacatgctaacaacatgcaaatCTACGCTAAAAGCATGCCAACAACATGCTTATTCACACTAGAAACTTGCTAGCAGTTCATGTTAATGTAATTTCATGCTAAGAACATGGTAAGTGATGCTTAAAAACATGCCTTCAAACTTTTGCCCTCAAACGCTAATGTCTAGTGTAGATTATTGATGGTTTGTGCTGTTTGTCTGCAGAGAGTGGCAGGACTCAGAGATCCATGTGGGCCTGTCAGATTCAGCAGGTCAGTAATTGCCCTTTTCAGTAATACTGATCAAACTTTCAGCATGTTTTGTCATTGCTCTGTTGTTCTGGCAGGTCTGGTCTACAACTACACACTGTCCGGGGTCCAGCGGGATGATCGCGGCTgggaacagtgtgtgtgtgtgcagctcgtCCCTCCGTCGAGACCTGAGCTCCGGGAATTATGGGATACACACCTCCAGCTGTTTGCCCTGCTGCCAGAATGGGCTTCAGAGCGGTTTGAAGAGGAGCGTGAGTTCGGCTCCTGCTGCTATGGCTTCGCTCTGACCTTCATAAACCGCATGCGTTCACTGGACAATAAAGACTGTCTGAGCAGAGATGAGTTCACTGGACGGTACATCTTACCCCGCATGAAGACCGTGTCCCTTTACATCAGCATCTACCAGACGATATTACAACACGGCTTTCACATAGCTAATACAGCGGATGACGAGTga

Function

symbol description
mkrn2os.1 Orthologous to human MKRN2OS (MKRN2 opposite strand).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-86 Orthologous to human MKRN2OS (MKRN2 opposite strand).

Ensembl:

ensembl_id ENSDARG00000086655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006152 False 904 mRNA 0.51 4 575665 580833
TCONS_00006153 True 1372 mRNA 0.39 2 577092 580690

Neighbor

gene id symbol gene type direction distance location
XLOC_003112 NA coding upstream 31471 543348 ~ 544194 (+)
XLOC_003111 raf1b coding upstream 35413 506465 ~ 540252 (+)
XLOC_003109 NA coding upstream 70836 474380 ~ 504829 (+)
XLOC_003110 NA coding upstream 81132 489935 ~ 494533 (+)
XLOC_003108 rab43 coding upstream 125566 440305 ~ 450099 (+)
XLOC_003114 mkrn2os.2 coding downstream 2309 583142 ~ 589128 (+)
XLOC_003115 timp4.1 coding downstream 110901 691734 ~ 701305 (+)
XLOC_003116 timp4.2 coding downstream 124894 705727 ~ 711032 (+)
XLOC_003117 timp4.3 coding downstream 133553 714386 ~ 718748 (+)
XLOC_003118 FQ311892.1 coding downstream 149974 730807 ~ 730923 (+)
XLOC_003250 BX324177.11 misc downstream 10764970 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10792053 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10805529 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10837200 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10848560 11429393 ~ 11429689 (+)
XLOC_003107 CR855375.1 non-coding upstream 204225 371322 ~ 371440 (+)
XLOC_003104 NA non-coding upstream 276566 298450 ~ 299099 (+)
XLOC_003126 AL935272.1 non-coding downstream 965284 1546117 ~ 1546231 (+)
XLOC_003132 NA non-coding downstream 1354851 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 1370798 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 1609788 2190621 ~ 2190730 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G435002 NA non-coding CI01000306 null 7799358 ~ 7799568 (+)
rainbow trout (Oncorhynchus mykiss) G441168 glrx2 unknown NC_048569.1 CM023223.2 76586458 ~ 76590370 (-)