XLOC_003108 (rab43)


Basic Information

Item Value
gene id XLOC_003108
gene name rab43
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 440305 ~ 450099 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006148
TGGCGACTCTGCAGgtgctgtaagtgtgtgtgtgtatcggtgtgtgtgtgtgtttctccacgTCACTGTCTTTCTCTCCCGGTATAGTGTCATCACCAGAGTCTCCTACAGCTTTCTTTCACCGGAGACTCACCGCGCACACAGCGATGTCATTGCTGGACTCCGATGACAGCTACGATCTAGTCTTCAAAATAGTTCTGGTCGGAGATGTCGGCGTCGGTAAAACTTGTGTGGTGCAGCGGTTCAAAACCGGCATATTCATCGAAAAACAAGGCAACACCATCGGCGTGGACTTCACCATGAAAACACTGGAGATACACGGCAAAAGGGTTAAGTTACAGATTTGGGACACAGCCGGACAGGAGCGGTTTCGCACCATCACTCAGAGTTACTACCGCAGCGCTAACGGAGCCATCATCACATATGACATCACCAAGAAAGCCACGTTTCTGTCTGTGCCCAAGTGGATGGAGGATGTGAAGAAATACGGCGGCTCCAACATCGTTCCTCTTTTAATCGgTAATAAATGCGACCTGTCGGAGTCTCGCGAGGTGCCGCTGGAGGACGCGCAGACCATGGCTCATCAGCTGGATTTCGTGAGCGCCATCGAGACATCAGCCAAAGACTCTAGTAATGTGGACGAGGCCTTCAACAAAATGGCCAGCGAGCTCATTCTCCGGCACGGCGGGCCCATGTTCACCGAAAACGTGACCGACAGCTTTAAACTGACAGGCAAGGATGTGGCCGGCGAGGGCTGGGGCTGCGGCTGCTGATGACCGGCTTCAGAAAGCAATAACAGCTCGAGTTCTTCAGCACAGATCAAccctgtttacatggacaccaatactgtGATTTAAAtaggattaagacaatactctgatcaagagtccACCGTGTAAACAGATGACCTAacgcaggggtgcccaaaccttttcttatgaagggccacaAATTAAACTTGATTGAGGATAGTGGGCTGAAGCTGAATATAGTTGCTCTgggtaattatttaattatattaaacataACTAGAAAACATTTCAGTATATTAACTGAtgcagtctttgtttttaaatatattttttacagtaaaaactaaatCTCATTGATGACAGACTGGAGTAAAACTAGTTTTTGCCTTAATTTGCTCTCGGAAAAATCTGATcttaacatttaattgaaacattccAGTTCAGTTTGCTTTGTTTGTAgctcagaaataaataaacaaacaaaaaaaggccaCGCCAAATGCGAAATGGCCCCCAGCCCTCTCCATCCTTCTCAGTCTCTTCTCAGATAGGATGGTTGGCCAAATCACAGGTTAAAATAGGCCAACTTTTGCCCCCGGGCCCtagtttgagcatctctggacTAAAGTTATAAAGAAAGTAAACTAAAAGTGAATGAAGACGTGTGGAGTCTTCCTGGTCCAGTACAgacatggaaacaccacaatcaaactattaccgtcatgcaAGACTTTTCCCTATATTTTGTGACGCGTCCAGTTGTCCGGCATTCGACCACAAATGAAAACGGCTTTTGGGTGCAATGCTGAGAATTCTGGGAGAAACGGACATCATGAAGAGCCTCGAGTCTGAATGAATGAAGGGTCAGCGGTGGCCTGTTGCTGGAGAATGTGTATCCACCCTCATCTCTTTGCAGGCGTAGTGTGAGAAATGAACTGCAGTTCGACTTTCAGTcgcaaaattataaattaaaacacCCAAAATCAACGATAGTGCCATCATGATGAACATTAAACGCTGGAGGAAACTAGCGTTGGtgacataatgataataatgcattAGAGTTGCACGCTTTACCAGTAGTCTGGTAGTATCGCGATACTATGGCTTCAAAATATTGGCAGTGCCACTGTAGTTTATAAACGGTCATATCGTCATTATCTACAATAGATAAAGTTTGATGTGGAAAATTCACTAAAATGCTCAAACGTTTGTGCAACAAGGCactattttatttgaatagtttgTGAAGCTCTTTAAGGTTATACATTTTCTGATGTTTTCTGACGTTTCAAACTCACATCTGAATCAATTAATTCTGTTCCTCTCATTAAGATTTAGAAGCTACAACAACCGTGACGATCTCTTAAAAAGAGCGACTAGCAAAGTGAAATCTGAATTACTTTGGATGGTTgcctgataagactgaaaaaaacaacaatagatGGAAAAACCCAAAACAGCAACTAATTCTGACCACTTCATATCGCCTATATTGTTGGAAAAAAGCTATTTTTGTAACAATTTTGATTTgataatttttatttgtatttttttttggtcagatatctacaaaataaacaaaaataatgaatattagatGAAGTGACAtgcaaaaaatactgttttttcaataataagggaattCTGAATTAAATTCACCGATTATTACcttttataacatgtaaaactgcATTTCTGACCATTTCCTTtatcatttgagttatgaattattgttatcatGACACTTCAGCTGGTTTAGTATCGTAAGATACCCTACTATGCACTTTaagatgtaaaacaggatcatgacaGGAGCACTGAACAGCAGCTCATGTAAAGTCCtccatcatattattgtcttattcagattgagGTAAATCAAtaatcactgatgtccatgtaaacagagTCACTGAGGGTGTTCCTGCATCCAGTAGCTTATAGAAGACTCCTGGAGCCACCCGGAACAGTGTGAAATCTTGGGCTAGAGACTATATTTAAATGCCAAAACTGTCACGCATTGTGTAAATCACAGCCAATCCAAATTTATGTCCAGCCGTTCTCATTAATCACTTTCATCCAAAGCCAATTTTTTAATCTAATGTAACTCTtataatagtattttaaatatgATGAACAGCTCGGGTAGCTGGCGTGGTGGACAAATAACAGCGCATGGTGATGGTGACTCAaccacagccaatcagaacacacttGCAGTAATGTGTAGCAAGACTTTAGACCAATGAGATTTCATGAGCGGGGCTTCTTAGTGCAGTGCCGGGGTAATGGTAGCCGAGCTGTTGAGGTCACACACTTAGAAGATCTTACTGTATGCGTTAAATCTATCCAGGATGTATATTTATGTAGTGTTTTTAATGATGTAAACAAGGCTGTGAGAGATATTTCTCAACATTAGTTCATCTGTGTGATGGACACAGCAGTGAACCACACTGAGCTCTCGCTTTCTCAACTCTTATTTAAGCGTCTTTCTTGAGACAGAAACGTGCAATAACACGATCTCCAAGTTGCATCCACCGAACCCGGCTCAGATCAGACGATCATCACAGACAAAACATGTCAATTCTttgtagcaacatgctaatccatgtgCTGAAACATGCTCGCAACGTACTGAGCCATGTTAGCCACAttaaagcagaacagaaacatgtTGGTAAACATGCAGCCGTCTGTTGACAATGTTAGAAAAGTGTTAGCATTATGCTAGGCTTGCATTAaagcatgctagaaacatgtcaGTTGATGATAGCAGAAAGATGCTAGGTTTTAAAACATTAGAAATGGGCTAGCAACATTTTATTACCtgtttgattttaaaaacatgctTGAAGCTGGTTAAATCATGCTTCCAGCATCTCAAACaagctagcatcatgctaatttaACATGTTAGCAACACAACAAGTAATATTAGCcacattaaacaaataagaatGGTTAGAAACATGTTCTTTGTGTTAGAAATATGCTAACCATGTTAGCTAGAAACATGCAAACATGCTAGGTGATGCTAGCAGTGTCTGTTAGAAGCATGCTAACCTAGTTTTAAAACTTGCTAGCAACATTTTCTTTCATGTTAAATTCGTTTGAACATGTAAAACATGCTAACATCATAATTCGCTGACTTGTTAGCAACACAAGAGATCATGCTAGCCACAaacaaattagaatagaaacatgttaacaaacaTGCTCTTCATGTTAGCAACCATGTTAGCTAGAAACATGCAAAACATGTCAGTTCATGCTAGCTAGTTCAGCATTAGAACATGCTAACCTGGTTTTAAACCAGGTTAGAAATGCGCTAGCAATTGTTTCTAATGTTGAACATGAAATAaacatgttagcatcatgctaatacaTGTTAGGCATGTGCTGAGAAATGCTAATAGCATTGTATTGACTTCAGCTTTATCCAAGCTCAACCGCCACGATTATAATCCTCCTGATCACTATTTCCAGAGCTTTTGTACAGCGGCTCACCAGCTTTTAGATATTCCAGTCAACATTACTGATGCTGAAGTTTGTtgagcaggggtgtccaagctcagtcctgcagagtttagctccaacgtccttcaacacacctgcccggaagtttctagtacacctgCAAAGAGCTTGACCAGCTGTTCAGGAGGGTTTCATTGGGGTTGGAACTgtaatatgcaggacaccgaccctccaggactgagtttggacacccctgatgtagacaAATCACTTCCATGACAGAACATGCAGTTAGAGCTGGTTTATCTGATGCTGATTTGAGCAGTCATGATCCGTAAGACGTCTGTTTGCTTTTAGCGTTTCGATTATTACTGTGGTAAATGACCTGCAGTTTTCCTCTCATCATCAGATTATATCCTGCATCATGTGTGTTTATAATCTGgccagtttaaaagcaaagtagACTGTTTTCCTCTATTGAATTGGCATTTTAATACAGATGGGCATTGATATTTTATATTGCATTCATTTAAACACACCGCGAGGCCTCGTTAAATTATATTagtaattaaactattattattttagatgcTAACTAGTTTTATAATATTGCACCATGTTTAATTCGTGACAAGATTGCGCTGAATTGGGGAAGCCGCATACGTTTCATCTCAGTCAGAGTCAGCAGAGCCATTGTAAATgaaatagcctatatttatattCCTCTGCAATATCCTGTTACGTATCCTCAGAGCACATTTTGGTACTTCTCATATATCCTTGATTAATATAATAGTGTTTAAATCAAGAAGTAAAATCAAGCTTTTACATCAAGAGGTGGTGGCAGACTGTGAGAGTGTAAAGTGCTGGGCTTCATGTGCTGTAGCGTGAGCGTGAATGAGGGCAGTGTTTGCAGTGCAGTCGTGTCTGATGTACTTGTAGGTGAATCAGACTGCGGGAGGGTTCTTGCCAGATTATATAGTGCCTTTAAAAACAGCTGTAATGTTGCTGTGGTTGTGTTTTTGTAATATTACTATGCATTTTGATGTTTTTAAATCACGATGTTTTAATGGAcaggttttttaatgttttgacagACATGATCGATTTGTATTCTGTGTTAAATTGTTATTCAGTTATTTTATCAATAAAGCATTCACGACATGA

Function

symbol description
rab43 Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to human RAB43 (RAB43, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0000045 autophagosome assembly biological_process
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-060825-25 Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to human RAB43 (RAB43, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000059404

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006148 True 5399 mRNA 0.40 3 440305 450099

Neighbor

gene id symbol gene type direction distance location
XLOC_003107 CR855375.1 coding upstream 68865 371322 ~ 371440 (+)
XLOC_003106 pdrg1 coding upstream 79988 355305 ~ 360317 (+)
XLOC_003105 cyp27b1 coding upstream 100458 329687 ~ 339847 (+)
XLOC_003103 mettl1 coding upstream 118058 296437 ~ 322247 (+)
XLOC_003104 NA coding upstream 141206 298450 ~ 299099 (+)
XLOC_003109 NA coding downstream 24281 474380 ~ 504829 (+)
XLOC_003110 NA coding downstream 39836 489935 ~ 494533 (+)
XLOC_003111 raf1b coding downstream 56366 506465 ~ 540252 (+)
XLOC_003112 NA coding downstream 93249 543348 ~ 544194 (+)
XLOC_003113 mkrn2os.1 coding downstream 125566 575665 ~ 580833 (+)
XLOC_003250 BX324177.11 misc downstream 10895704 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10922787 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10936263 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10967934 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10979294 11429393 ~ 11429689 (+)
XLOC_003101 NA non-coding upstream 273481 96979 ~ 166824 (+)
XLOC_003099 NA non-coding upstream 384579 54204 ~ 55726 (+)
XLOC_003118 FQ311892.1 non-coding downstream 280708 730807 ~ 730923 (+)
XLOC_003126 AL935272.1 non-coding downstream 1096018 1546117 ~ 1546231 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_04547933_04555967 RAB43 coding CI01000057 null 4547757 ~ 4555988 (+)
bowfin (Amia calva) AMCG00016325 rab30,LOC107670675 coding CM030122.1 CM030122.1 16435492 ~ 16445488 (-)