XLOC_003103 (mettl1)


Basic Information

Item Value
gene id XLOC_003103
gene name mettl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 296437 ~ 322247 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006142
agagaGTGCACATGTGTAGCAGGAGAGGGAAGTCAACACTAGTGTGTATTACGGACAAcaccgagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtgtgcgtaTAGCAGTCGCGATGAGTGTGTGTATGCCACAAAAGCGTTACTACCGGCAGAGAGCCCACTCTAACCCCATGGCGGACCACACCTTCCagtatccgGTGTGTCCAGAGCAGATGGACTGGTCTCCGCTGTACCCGCAGTATTTCCCTCAGCAGGAGGAGGCTGGAGGAGCGCAGGTGGAGTTCGCAGACATCGGCTGCGGATACGGAGGACTGctggTCCAGCTCTCGCAGCTCTTCCCTCAGCAGCTGATTCTGGGTCTGGAGATCCGGGTTAAAGTTTCGGATTATGTGCAGGACCGCATCCGCTCTCTGAGAGTGGCAGAACCGGGCCGGTACCAGAACATCGCCTGTCTGCGCAGCAACGCCATGAAGTATCTGCCCAACTTCTTCAGGAAGGGCCAGCTCAGTAAGATGTTCTTCCTCTTTCCGGACCCTCATTTCAAGAAAACCAAACACAAGTGGCGCATCATCAGCCCCACACTGCTGGCCGAGTACGCATACACACTGCGCATCGGGGGTTTGGTTTACACGAACACTGATGTAGAAGAGGTGCACGAGTGGATCGTCCAACACTTCAGTGATCATCCTCTCTTCAGCAGAGTCACGGAGGagcagctgGCTGATGACATCATCGTCGGTCACCTGGGAACCTGCACGGAGGAGGGAAAGAAGGTGCAGAGAAACGGAGGGAAGAACTTTCTGGCAGTTTTCCGCAGAGTGGAGGATCCGCAGACGTGAAGATCACATCATTATAGCAGCGTGATCTCGTTACACAAGTACACTGAGTTTTGGACATTACTGTACATTAAAGATTTACTGTATGAAGA
>TCONS_00006143
gtgtgtgtgtgtgagagagagagagtgtgcgtaTAGCAGTCGCGATGAGTGTGTGTATGCCACAAAAGCGTTACTACCGGCAGAGAGCCCACTCTAACCCCATGGCGGACCACACCTTCCagtatccgGTGTGTCCAGAGCAGATGGACTGGTCTCCGCTGTACCCGCAGTATTTCCCTCAGCAGGAGGAGGCTGGAGGAGCGCAGGTGGAGTTCGCAGACATCGGCTGCGGATACGGAGGACTGctggTCCAGCTCTCGCAGCTCTTCCCTCAGCAGCTGATTCTGGGTCTGGAGATCCGGGTTAAAGTTTCGGATTATGTGCAGGACCGCATCCGCTCTCTGAGAGTGGCAGAACCGGGCCGGTACCAGAACATCGCCTGTCTGCGCAGCAACGCCATGAAGTATCTGCCCAACTTCTTCAGGAAGGGCCAGCTCAGTAAGATGTTCTTCCTCTTTCCGGACCCTCATTTCAAGAAAACCAAACACAAGTGGCGCATCATCAGCCCCACACTGCTGGCCGAGTACGCATACACACTGCGCATCGGGGGTTTGGTTTACACAAACACTGATGTAGAAGAGGTGCACGAGTGGATCGTCCAACACTTCAGTGATCATCCTCTCTTCAGCAGAGTCACGGAGGagcagctgGCTGATGACATCATCGTCGGTCACCTGGGAACCTGCACGGAGGAGGGAAAGAAGGTGCAGAGAAACGGAGGGAAGAACTTTCTGGCAGTTTTCCGCAGAGTGGAGGATCCGCAGACGTGAAGATCACATCATTATAGCAGCGTGATCTCGTTACACAAGTACACTGAGTTTTGGACATTACTGTACATTAAAGATTTACTGTATGAAGAG

Function

symbol description
mettl1 Predicted to enable tRNA (guanine-N7-)-methyltransferase activity. Predicted to be involved in RNA (guanine-N7)-methylation and tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in nucleus. Predicted to be part of tRNA methyltransferase complex. Orthologous to human METTL1 (methyltransferase 1, tRNA methylguanosine).

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0030488 tRNA methylation biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005634 nucleus cellular_component
GO:0043527 tRNA methyltransferase complex cellular_component
GO:0000049 tRNA binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-041010-24 Predicted to enable tRNA (guanine-N7-)-methyltransferase activity. Predicted to be involved in RNA (guanine-N7)-methylation and tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in nucleus. Predicted to be part of tRNA methyltransferase complex. Orthologous to human METTL1 (methyltransferase 1, tRNA methylguanosine).

Ensembl:

ensembl_id ENSDARG00000076518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006142 False 937 mRNA 0.53 6 296437 322246
TCONS_00006143 True 860 mRNA 0.54 6 296515 322247

Neighbor

gene id symbol gene type direction distance location
XLOC_003101 NA coding upstream 129613 96979 ~ 166824 (+)
XLOC_003102 NCKAP1L coding upstream 137109 141504 ~ 159328 (+)
XLOC_003100 CABZ01072242.1 coding upstream 218245 77526 ~ 78192 (+)
XLOC_003099 NA coding upstream 240711 54204 ~ 55726 (+)
XLOC_003105 cyp27b1 coding downstream 7440 329687 ~ 339847 (+)
XLOC_003106 pdrg1 coding downstream 33058 355305 ~ 360317 (+)
XLOC_003107 CR855375.1 coding downstream 49075 371322 ~ 371440 (+)
XLOC_003108 rab43 coding downstream 118058 440305 ~ 450099 (+)
XLOC_003109 NA coding downstream 152133 474380 ~ 504829 (+)
XLOC_003250 BX324177.11 misc downstream 11023556 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 11050639 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 11064115 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 11095786 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 11107146 11429393 ~ 11429689 (+)
XLOC_003110 NA non-coding downstream 167688 489935 ~ 494533 (+)
XLOC_003112 NA non-coding downstream 221101 543348 ~ 544194 (+)
XLOC_003118 FQ311892.1 non-coding downstream 408560 730807 ~ 730923 (+)

Expression


Co-expression Network