RNA id: TCONS_00006143


Basic Information

Item Value
RNA id TCONS_00006143
length 860
RNA type mRNA
GC content 0.54
exon number 6
gene id XLOC_003103
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 296437 ~ 322247 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtgtgtgtgagagagagagagtgtgcgtaTAGCAGTCGCGATGAGTGTGTGTATGCCACAAAAGCGTTACTACCGGCAGAGAGCCCACTCTAACCCCATGGCGGACCACACCTTCCagtatccgGTGTGTCCAGAGCAGATGGACTGGTCTCCGCTGTACCCGCAGTATTTCCCTCAGCAGGAGGAGGCTGGAGGAGCGCAGGTGGAGTTCGCAGACATCGGCTGCGGATACGGAGGACTGctggTCCAGCTCTCGCAGCTCTTCCCTCAGCAGCTGATTCTGGGTCTGGAGATCCGGGTTAAAGTTTCGGATTATGTGCAGGACCGCATCCGCTCTCTGAGAGTGGCAGAACCGGGCCGGTACCAGAACATCGCCTGTCTGCGCAGCAACGCCATGAAGTATCTGCCCAACTTCTTCAGGAAGGGCCAGCTCAGTAAGATGTTCTTCCTCTTTCCGGACCCTCATTTCAAGAAAACCAAACACAAGTGGCGCATCATCAGCCCCACACTGCTGGCCGAGTACGCATACACACTGCGCATCGGGGGTTTGGTTTACACAAACACTGATGTAGAAGAGGTGCACGAGTGGATCGTCCAACACTTCAGTGATCATCCTCTCTTCAGCAGAGTCACGGAGGagcagctgGCTGATGACATCATCGTCGGTCACCTGGGAACCTGCACGGAGGAGGGAAAGAAGGTGCAGAGAAACGGAGGGAAGAACTTTCTGGCAGTTTTCCGCAGAGTGGAGGATCCGCAGACGTGAAGATCACATCATTATAGCAGCGTGATCTCGTTACACAAGTACACTGAGTTTTGGACATTACTGTACATTAAAGATTTACTGTATGAAGAG

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0030488 tRNA methylation biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005634 nucleus cellular_component
GO:0043527 tRNA methyltransferase complex cellular_component
GO:0000049 tRNA binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-041010-24 Predicted to enable tRNA (guanine-N7-)-methyltransferase activity. Predicted to be involved in RNA (guanine-N7)-methylation and tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in nucleus. Predicted to be part of tRNA methyltransferase complex. Orthologous to human METTL1 (methyltransferase 1, tRNA methylguanosine).

Ensembl:

ensembl_id ENSDART00000109091

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008503 lncRNA upstream 129691 96979 ~ 166824 (+) True XLOC_003101
TCONS_00008504 lncRNA upstream 142407 153413 ~ 154108 (+) True XLOC_003102
TCONS_00008502 lncRNA upstream 240789 54204 ~ 55726 (+) True XLOC_003099
TCONS_00006146 lncRNA downstream 33060 355307 ~ 356260 (+) True XLOC_003106
TCONS_00008375 lncRNA downstream 152133 474380 ~ 504829 (+) False XLOC_003109
TCONS_00008506 lncRNA downstream 167688 489935 ~ 494533 (+) True XLOC_003110
TCONS_00008507 lncRNA downstream 176199 498446 ~ 504829 (+) False XLOC_003109
TCONS_00006149 lncRNA downstream 179407 501654 ~ 504829 (+) True XLOC_003109
TCONS_00006141 mRNA upstream 137187 141504 ~ 159328 (+) False XLOC_003102
TCONS_00006140 mRNA upstream 218323 77526 ~ 78192 (+) True XLOC_003100
TCONS_00006144 mRNA downstream 7440 329687 ~ 339847 (+) True XLOC_003105
TCONS_00006145 mRNA downstream 33058 355305 ~ 360317 (+) False XLOC_003106
TCONS_00006148 mRNA downstream 118058 440305 ~ 450099 (+) True XLOC_003108
TCONS_00006150 mRNA downstream 184218 506465 ~ 540252 (+) False XLOC_003111
TCONS_00006152 mRNA downstream 253418 575665 ~ 580833 (+) False XLOC_003113
TCONS_00006147 other downstream 49075 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006161 other downstream 408560 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006169 other downstream 1199932 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 1223870 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 1868374 2190621 ~ 2190730 (+) True XLOC_003138

Expression Profile

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