RNA id: TCONS_00006145


Basic Information

Item Value
RNA id TCONS_00006145
length 1537
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_003106
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 355305 ~ 360317 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATAACACACGCACAGTTCAGCATGGACGAAAGCGCGCAGCGGGTACTGGAGCATCTGACTGAGGTAGAGGTTGCTGCAGAAGACATACTCACCGACAAACAACAGATTGTGGATCTGGATGTGCGGAGAAACAGAAACCGAGAAGCTCTCAGCGCGTTAAGAAACAACTCACCAAACGATAATGTAAAGGTGTGTTTTGGAAATATGTTCATCAAATTCCCTCAAGAAAGCACCAGATCAATGATCCTGAAAGACCAAGAGCAGCTTGATAAGGAAATAACAGACCTCCGCACACGACTGAAAGCGAAAGTGAACCGTCTCAATGAGCTACAAGGTAAACCTGAGCTTAGAGGATACAACCTTGCTCCTCTGAGCAGTGATGAAGTAAAGGCGATTAACAGCCTTCTGAAGAAGTGAAGTTGATGAAATGAGTTATTCAGACTGCTTTGAGCCTGGAAATGGGTTGATGTATTGAGCAGTGCACTGGAGCACTAAACCAGCGGTGACTTCACCCACTCCACACAAGATCTGTGTCCTTCTCTTTGGTTTATTCAGTGGTTTTTTCATGCATGGTGTTTGTCAAGTCTGGTCCATGTTCTGTGGGATGTGAGATCATTCACACTTGTGCTTCTTCCCTGTTTCATTTTGAACAGGTTAAAATCAATTGCTGTTTTGTTGAGTGCACATATGAGGATGTTTTGTTGGTCATAATTCAATGCATTTGTGTTTAAATAACTGGATtatactgtttaaaataaaattaactgttgAAGAGAGAAGCCAGAATAATGCACAGATTTCCTGCTGGGtattcttattcattcattttcttgtcggcttattccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacacagcggatacccttccagctgcaacccatctctgggaaaagtattattattatattttttcttactTTCACAGATTCTGTTAATAAACTgcatcattttaatacatttttaaatatttcttttgaTCTATTATGTAGATGTGGtccttcaaaaaataaataaaggatctCCATGTCGCTCTGCTGGATATACtgtatatcaggggtgtccaaactcagtcctggagggctggtgtcctgtagagtttagctccaaccctaatcaaacacacctgaagcagctgatcaagctcttactagatatactagaaacttcctggcaggtgtgttgaggcaagttggagctaaactcagcaggacaccggccctcaggactgagtttggacactcctgctgtATATGGTTAACAGCATTTATCTCTGTATTTTCTGCAGGTCTTTGTTTAGCCAGCAGATGGCAGCTTTGCTTTGTGTTAGTTTTATGTTGCAGTAAGTACAGTTGAAGGCTGAATTGGCCTATTCATGTAGTTTAGTAAAactatatcatttgagcatcgatatcgcagtgtGTAAATCTGCAGTCGTCACATTGCAAgattagattgtttattaaagataaagattcattca

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-276 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Orthologous to human PDRG1 (p53 and DNA damage regulated 1).

Ensembl:

ensembl_id ENSDART00000147426

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008505 lncRNA upstream 56206 298450 ~ 299099 (+) True XLOC_003104
TCONS_00008503 lncRNA upstream 188481 96979 ~ 166824 (+) True XLOC_003101
TCONS_00008504 lncRNA upstream 201197 153413 ~ 154108 (+) True XLOC_003102
TCONS_00008502 lncRNA upstream 299579 54204 ~ 55726 (+) True XLOC_003099
TCONS_00008375 lncRNA downstream 114063 474380 ~ 504829 (+) False XLOC_003109
TCONS_00008506 lncRNA downstream 129618 489935 ~ 494533 (+) True XLOC_003110
TCONS_00008507 lncRNA downstream 138129 498446 ~ 504829 (+) False XLOC_003109
TCONS_00006149 lncRNA downstream 141337 501654 ~ 504829 (+) True XLOC_003109
TCONS_00006151 lncRNA downstream 176705 537022 ~ 539607 (+) True XLOC_003111
TCONS_00006144 mRNA upstream 15458 329687 ~ 339847 (+) True XLOC_003105
TCONS_00006143 mRNA upstream 33058 296515 ~ 322247 (+) True XLOC_003103
TCONS_00006142 mRNA upstream 33059 296437 ~ 322246 (+) False XLOC_003103
TCONS_00006141 mRNA upstream 195977 141504 ~ 159328 (+) False XLOC_003102
TCONS_00006140 mRNA upstream 277113 77526 ~ 78192 (+) True XLOC_003100
TCONS_00006148 mRNA downstream 79988 440305 ~ 450099 (+) True XLOC_003108
TCONS_00006150 mRNA downstream 146148 506465 ~ 540252 (+) False XLOC_003111
TCONS_00006152 mRNA downstream 215348 575665 ~ 580833 (+) False XLOC_003113
TCONS_00006153 mRNA downstream 216775 577092 ~ 580690 (+) True XLOC_003113
TCONS_00006154 mRNA downstream 222825 583142 ~ 587187 (+) False XLOC_003114
TCONS_00006147 other downstream 11005 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006161 other downstream 370490 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006169 other downstream 1161862 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 1185800 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 1830304 2190621 ~ 2190730 (+) True XLOC_003138

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05933567_05935825.mRNA True 549 mRNA 0.42 4 CI01000057 5933567 ~ 5936062 (+)