RNA id: TCONS_00006141


Basic Information

Item Value
RNA id TCONS_00006141
length 3372
RNA type mRNA
GC content 0.54
exon number 30
gene id XLOC_003102
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 141504 ~ 159328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgGCCTACCAGCTGAAACTGGCGGAGAAGCTGCTGATCCTCCGTGACCGTGGGCAGGGTGTGCTGGTGCGCATCAACCACATCAAGAAGGTTTTCTCAGACCCAAAGCGAAGACCTTCATACTTCACTGATAAAAGCATGGAGTCTGCCATAAAATACATCAACAGAAAATTCCCCAACATCGACTTCAGGGGTGGCAGTCAACAGCTGAGCAGCATTCAGAAACAGAAGACCGCCGTGCTGGAGTGTCTGCACAGCTACTACGAGTCCTTCATAGATGTCATGGAGTTCAGGGACCATGTTTATGAGCTGTTGAACACAATCGACGCCTGTCAGTGCTTCTTTAACATCATTGTGAATTTTGACCTGACCAAGAATTACCTGGACCTCGTGGTCACCTACGCCTCTGTCATCTACATGCTGTCCCGCATTGAGGACAAGAAAGCCATAGTGGGAATGTATAACTCTGCGTATGAGCTGTCCAACGGGAACAGTGATCCCTCGTACCCTCGTCTGGGACAGATGTTCTTAGAGTACGAACACCCCTGGAAGAAGCTGTCTGAGGAGTTCGGTCCACACACTAAGgcggTGACGGAGGCTGTTCTCTCTCTGCATCTGGTGTATCCGCGCAGGAATCTGACTGCAGATCAGTGGCGCAGTGCTCAGCTCCTGTCCCTGCTGGCTTCACCCGCCGCCATGCTGAGCCCGGCCTGCTGTGACACTGTGGCGTGTGAGTATCTGTCCATGGAGGTGATGGAGCGCTGGATCCTCATCGGGTTCCTGTTGTGTCATGCGAGTCTCAACACCAACGCAAACTCTCAGAGTCTGTGGAAGATGGCGCTGCGCAACGGCCTGTACATCAGCATCATCAGAGACGAGCTGCTCAACATACACAAGCTCTCAGAGGAGTTCTTCGACAGTCTTAaaggGTACAGTAAACGCATCGCTGACATCAAGGAGTGTAAAGAGCACGTGCTGGCCAACTGcggtgcGTTGCGCAGAGAGAAGCGCAGCTATCTGAGGAACGCCCTGAAGGAGCTGACTAAAGTGCTGGAGGACGAGCCGGCGCTGCTGGGACCCAAGgtgTTGTTTGTGTTCATGGCGCTGTCGTTCTCTCGGGATGAAGTGCTGTGGCTCGTGCGGCACATGGAGAACATCCCCAAAACCAAAACACCGGAGGATTACGCAGACCCgcagaTGGCCGAGCTGCTCTTCTACATGGAGAAGTTGCGCGCGCTGCTGCTGCGTCACAGATACGTGGTTCAGCGATATCATCTGCAGTATCTGGCACAGTACGACGCGCTCGTGCTCAACGACACCATTCAGGGCATGCTCGTGTGTCCAGAGGAGGAGTCTGTGCTCATGTCCTCATTCGTCTCCACTCTGTCTGCGCTCAGCCTCAAACACTGTGAGTTACACACACGAACATAtatgcgtgcgtgtgtgtgtgtgtgtgtgtgtctgcaggtgtACACCAGTGTGGGTAAAGCTCCTCTGGCCCTGAAGGATTACCCAGAGCTGGCCAAGATCATGAACGTGTCTCAGTTTCACAGCCGCATGCTGGACAGTGTGGAGGAACTGCTGTGGGAGACCACGGACCTGTCTGTGCTctgtTTTCACGCGCGTGTGTTTGAGAAGCTCTTCTCTCAGAGCAGCgaggatgtgtgtgtgcagcgaTACCTCATGGGCTTCCCGCTCGTCTGCTCACACTTCAGCCAGAGTCTCCATCCACTCTGCCCAGAGGAGacTGAAGATCTAGAGAAGCAGAGCCTGAAGCTGTGTGTGTCGTTTCTGGAAGAGATCTCACGTCAGACCAGTGCGGTGGTGCTGGAGATCTGTGCTGAGCAGTGGAACCTGCACGAaaagctgctGCCCAAACACAGCGCTCAGACCATCAGCACAGCCCGCAACAAAAAACTGAAGAAGGTGCAGCCCAAGAAAGGAGACGCTCCCAGGGAGAAGCCGGGGGCCGAGAGCCTGCGCAAGGACAGAGCCTTCGTCACCAATCTGGATAAGATGCACCAGACCCTGACAGAGCTGTGCTCCTCGTTCAGCATCTGCACTGATTTCTCCGTCTGCAGACACGTCATCGTGCCGGCCGAGTTCCTGCTCACACAGCTGGAGATCAGACTCAACAAGGTGTTTGTGCAGATGGCGGGCTACAATCAGAGCACTCATGAGATCTCGCGTCCGTCAGATCTTGCGTCAGGAATGCAGGCGTACGTCAGCGCGATACACACTCTCAGCTCCTACATCAACATCGACGTCTCGCGCCTCGTCAAGAGTGTGTTACTGCAGCAGACACAGCCGCTCGACTCTTACGGCGCGCAGACCATCACCACACTCTACACCAactgGTATCTGGAGGGTCTCCTCCGTCAGGCCAGCAGTGCTCTGATCGTCCACTGCCCCACCACACAGTGCTTCATAAACCAGAACACCGAGAACGAGCAGAACTTCCACGCCGAGGAGTACTCTGACATTGGAGGTTTGCGCTCGTTGGCTGAACTGATCGGTCCTTATGGGATGAAGTTTTTAAGCGAGAACCTCATGTGGCACATCATATCTCAGGTTGGAGAACTGAAGAAACTTGTCAGCGACAACATGGATGTCCTGGTGCAGATGAGGGCAAACTACGAGGATCCCGAAGCCATGAGTGAACTCCAGAAGAAGCTCGCAGGCTGTGAGAACGTGCTGAAGAGAATGACCATCATCGGGGTGATCCTGTCCTTCCGCTCCATGGTCCAAGAAGCTCTGGAGGAGATCATGGACAGACACTGCCCGTTCCTCATGAAGCCCATCAGATGCCTGAAGGACTTCGTCTGTCCAGAGATCGACATCAAGgtcacTCTGGGTGTGTATGAAATGGCGTCGGCCGCTGGTTTGCCCTGTGAGATCGACCCCGCGCTGGTTTCCGCATTAGCAAACATGCAGACAGATAACCCGTCGATGGAGGAGGAGTATAAGATCAGCTGTCTGCTGCTGGTGTACATCGCCGTTTCCCTGCCGTCGCTCTGCCTGGATCCAAACTCATTCTACAGCCGCGAGCACGGAGGTCACCAGAACAACATCCACTGTTTGGCGACTGCGGTGAACCACGTGGCAGCGGCCATGTTCACCGTCCAGAGGAAGAACATCCAGACGCAGATGCAGGAGTTCCTGAAGGTGGCGTCCTCTGTCCTACTCCAGCTCGGTCAGAATGTGGACAACAGAGAGATCAAGAACAGGGATTCGGTTTATATCCTTCTGCACATGATCGTGGAGCAGTCGCCGTTCTTGAGTCAGGATATGCTGGAGATGTGTTTTCCCTACGTGCTCCTCAGAAACGCATACAGAGAAGTGCACAAAGTCTTCATCCACACCATGGGCTGA

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0031209 SCAR complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-117 Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and neuron projection morphogenesis. Predicted to be part of SCAR complex. Human ortholog(s) of this gene implicated in immunodeficiency 72. Orthologous to human NCKAP1L (NCK associated protein 1 like).

Ensembl:

ensembl_id ENSDART00000086166

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008502 lncRNA upstream 85778 54204 ~ 55726 (+) True XLOC_003099
TCONS_00008505 lncRNA downstream 139122 298450 ~ 299099 (+) True XLOC_003104
TCONS_00006146 lncRNA downstream 195979 355307 ~ 356260 (+) True XLOC_003106
TCONS_00008375 lncRNA downstream 315052 474380 ~ 504829 (+) False XLOC_003109
TCONS_00008506 lncRNA downstream 330607 489935 ~ 494533 (+) True XLOC_003110
TCONS_00008507 lncRNA downstream 339118 498446 ~ 504829 (+) False XLOC_003109
TCONS_00006140 mRNA upstream 63312 77526 ~ 78192 (+) True XLOC_003100
TCONS_00006142 mRNA downstream 137109 296437 ~ 322246 (+) False XLOC_003103
TCONS_00006143 mRNA downstream 137187 296515 ~ 322247 (+) True XLOC_003103
TCONS_00006144 mRNA downstream 170359 329687 ~ 339847 (+) True XLOC_003105
TCONS_00006145 mRNA downstream 195977 355305 ~ 360317 (+) False XLOC_003106
TCONS_00006148 mRNA downstream 280977 440305 ~ 450099 (+) True XLOC_003108
TCONS_00006147 other downstream 211994 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006161 other downstream 571479 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006169 other downstream 1362851 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 1386789 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 2031293 2190621 ~ 2190730 (+) True XLOC_003138

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_00534471_00559759.mRNA True 4311 mRNA 0.44 31 CI01000057 533588 ~ 559759 (-)