XLOC_003102 (NCKAP1L)


Basic Information

Item Value
gene id XLOC_003102
gene name NCKAP1L
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 141504 ~ 159328 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006141
atgGCCTACCAGCTGAAACTGGCGGAGAAGCTGCTGATCCTCCGTGACCGTGGGCAGGGTGTGCTGGTGCGCATCAACCACATCAAGAAGGTTTTCTCAGACCCAAAGCGAAGACCTTCATACTTCACTGATAAAAGCATGGAGTCTGCCATAAAATACATCAACAGAAAATTCCCCAACATCGACTTCAGGGGTGGCAGTCAACAGCTGAGCAGCATTCAGAAACAGAAGACCGCCGTGCTGGAGTGTCTGCACAGCTACTACGAGTCCTTCATAGATGTCATGGAGTTCAGGGACCATGTTTATGAGCTGTTGAACACAATCGACGCCTGTCAGTGCTTCTTTAACATCATTGTGAATTTTGACCTGACCAAGAATTACCTGGACCTCGTGGTCACCTACGCCTCTGTCATCTACATGCTGTCCCGCATTGAGGACAAGAAAGCCATAGTGGGAATGTATAACTCTGCGTATGAGCTGTCCAACGGGAACAGTGATCCCTCGTACCCTCGTCTGGGACAGATGTTCTTAGAGTACGAACACCCCTGGAAGAAGCTGTCTGAGGAGTTCGGTCCACACACTAAGgcggTGACGGAGGCTGTTCTCTCTCTGCATCTGGTGTATCCGCGCAGGAATCTGACTGCAGATCAGTGGCGCAGTGCTCAGCTCCTGTCCCTGCTGGCTTCACCCGCCGCCATGCTGAGCCCGGCCTGCTGTGACACTGTGGCGTGTGAGTATCTGTCCATGGAGGTGATGGAGCGCTGGATCCTCATCGGGTTCCTGTTGTGTCATGCGAGTCTCAACACCAACGCAAACTCTCAGAGTCTGTGGAAGATGGCGCTGCGCAACGGCCTGTACATCAGCATCATCAGAGACGAGCTGCTCAACATACACAAGCTCTCAGAGGAGTTCTTCGACAGTCTTAaaggGTACAGTAAACGCATCGCTGACATCAAGGAGTGTAAAGAGCACGTGCTGGCCAACTGcggtgcGTTGCGCAGAGAGAAGCGCAGCTATCTGAGGAACGCCCTGAAGGAGCTGACTAAAGTGCTGGAGGACGAGCCGGCGCTGCTGGGACCCAAGgtgTTGTTTGTGTTCATGGCGCTGTCGTTCTCTCGGGATGAAGTGCTGTGGCTCGTGCGGCACATGGAGAACATCCCCAAAACCAAAACACCGGAGGATTACGCAGACCCgcagaTGGCCGAGCTGCTCTTCTACATGGAGAAGTTGCGCGCGCTGCTGCTGCGTCACAGATACGTGGTTCAGCGATATCATCTGCAGTATCTGGCACAGTACGACGCGCTCGTGCTCAACGACACCATTCAGGGCATGCTCGTGTGTCCAGAGGAGGAGTCTGTGCTCATGTCCTCATTCGTCTCCACTCTGTCTGCGCTCAGCCTCAAACACTGTGAGTTACACACACGAACATAtatgcgtgcgtgtgtgtgtgtgtgtgtgtgtctgcaggtgtACACCAGTGTGGGTAAAGCTCCTCTGGCCCTGAAGGATTACCCAGAGCTGGCCAAGATCATGAACGTGTCTCAGTTTCACAGCCGCATGCTGGACAGTGTGGAGGAACTGCTGTGGGAGACCACGGACCTGTCTGTGCTctgtTTTCACGCGCGTGTGTTTGAGAAGCTCTTCTCTCAGAGCAGCgaggatgtgtgtgtgcagcgaTACCTCATGGGCTTCCCGCTCGTCTGCTCACACTTCAGCCAGAGTCTCCATCCACTCTGCCCAGAGGAGacTGAAGATCTAGAGAAGCAGAGCCTGAAGCTGTGTGTGTCGTTTCTGGAAGAGATCTCACGTCAGACCAGTGCGGTGGTGCTGGAGATCTGTGCTGAGCAGTGGAACCTGCACGAaaagctgctGCCCAAACACAGCGCTCAGACCATCAGCACAGCCCGCAACAAAAAACTGAAGAAGGTGCAGCCCAAGAAAGGAGACGCTCCCAGGGAGAAGCCGGGGGCCGAGAGCCTGCGCAAGGACAGAGCCTTCGTCACCAATCTGGATAAGATGCACCAGACCCTGACAGAGCTGTGCTCCTCGTTCAGCATCTGCACTGATTTCTCCGTCTGCAGACACGTCATCGTGCCGGCCGAGTTCCTGCTCACACAGCTGGAGATCAGACTCAACAAGGTGTTTGTGCAGATGGCGGGCTACAATCAGAGCACTCATGAGATCTCGCGTCCGTCAGATCTTGCGTCAGGAATGCAGGCGTACGTCAGCGCGATACACACTCTCAGCTCCTACATCAACATCGACGTCTCGCGCCTCGTCAAGAGTGTGTTACTGCAGCAGACACAGCCGCTCGACTCTTACGGCGCGCAGACCATCACCACACTCTACACCAactgGTATCTGGAGGGTCTCCTCCGTCAGGCCAGCAGTGCTCTGATCGTCCACTGCCCCACCACACAGTGCTTCATAAACCAGAACACCGAGAACGAGCAGAACTTCCACGCCGAGGAGTACTCTGACATTGGAGGTTTGCGCTCGTTGGCTGAACTGATCGGTCCTTATGGGATGAAGTTTTTAAGCGAGAACCTCATGTGGCACATCATATCTCAGGTTGGAGAACTGAAGAAACTTGTCAGCGACAACATGGATGTCCTGGTGCAGATGAGGGCAAACTACGAGGATCCCGAAGCCATGAGTGAACTCCAGAAGAAGCTCGCAGGCTGTGAGAACGTGCTGAAGAGAATGACCATCATCGGGGTGATCCTGTCCTTCCGCTCCATGGTCCAAGAAGCTCTGGAGGAGATCATGGACAGACACTGCCCGTTCCTCATGAAGCCCATCAGATGCCTGAAGGACTTCGTCTGTCCAGAGATCGACATCAAGgtcacTCTGGGTGTGTATGAAATGGCGTCGGCCGCTGGTTTGCCCTGTGAGATCGACCCCGCGCTGGTTTCCGCATTAGCAAACATGCAGACAGATAACCCGTCGATGGAGGAGGAGTATAAGATCAGCTGTCTGCTGCTGGTGTACATCGCCGTTTCCCTGCCGTCGCTCTGCCTGGATCCAAACTCATTCTACAGCCGCGAGCACGGAGGTCACCAGAACAACATCCACTGTTTGGCGACTGCGGTGAACCACGTGGCAGCGGCCATGTTCACCGTCCAGAGGAAGAACATCCAGACGCAGATGCAGGAGTTCCTGAAGGTGGCGTCCTCTGTCCTACTCCAGCTCGGTCAGAATGTGGACAACAGAGAGATCAAGAACAGGGATTCGGTTTATATCCTTCTGCACATGATCGTGGAGCAGTCGCCGTTCTTGAGTCAGGATATGCTGGAGATGTGTTTTCCCTACGTGCTCCTCAGAAACGCATACAGAGAAGTGCACAAAGTCTTCATCCACACCATGGGCTGA
>TCONS_00008504
gtgtgtgtgtgtgtgtgttcagctgctGCCCAAACACAGCGCTCAGACCATCAGCACAGCCCGCAACAAAAAACTGAAGAAGGTGCAGCCCAAGAAAGGAGACGCTCCCAGGGAGAAGCCGGGGGCCGAGAGCCTGCGCAAGGACAGAGCCTTCGTCACCAATCTGGATAAGATGCACCAGACCCTGACAGAGCTGTGCTCCTCGTTCAGCATCTGCACTGATTTCTCCGTCTGCAGACACGTCATCGTGCCGGCCGAGTTCCTGCTCACACAGCTGGAGATCAGACTCAACAAGGTGTTTGTGCAGATGGCGGGCTACAATCAGAGCACTCATGAGATCTCGCGTCCGTCAGATCTTGCGTCAGGAATGCAGGCGTACGTCAGCGCGATACACACTCTCAGCTCCTACATCAACATCGACGTCTCGCG

Function

symbol description
nckap1l Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and neuron projection morphogenesis. Predicted to be part of SCAR complex. Human ortholog(s) of this gene implicated in immunodeficiency 72. Orthologous to human NCKAP1L (NCK associated protein 1 like).

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0031209 SCAR complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-117 Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and neuron projection morphogenesis. Predicted to be part of SCAR complex. Human ortholog(s) of this gene implicated in immunodeficiency 72. Orthologous to human NCKAP1L (NCK associated protein 1 like).

Ensembl:

ensembl_id ENSDARG00000075748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006141 False 3372 mRNA 0.54 30 141504 159328
TCONS_00008504 True 429 lncRNA 0.56 3 153413 154108

Neighbor

gene id symbol gene type direction distance location
XLOC_003100 CABZ01072242.1 coding upstream 63312 77526 ~ 78192 (+)
XLOC_003099 NA coding upstream 85778 54204 ~ 55726 (+)
XLOC_003103 mettl1 coding downstream 137109 296437 ~ 322247 (+)
XLOC_003104 NA coding downstream 139122 298450 ~ 299099 (+)
XLOC_003105 cyp27b1 coding downstream 170359 329687 ~ 339847 (+)
XLOC_003106 pdrg1 coding downstream 195977 355305 ~ 360317 (+)
XLOC_003107 CR855375.1 coding downstream 211994 371322 ~ 371440 (+)
XLOC_003250 BX324177.11 misc downstream 11186475 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 11213558 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 11227034 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 11258705 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 11270065 11429393 ~ 11429689 (+)
XLOC_003109 NA non-coding downstream 315052 474380 ~ 504829 (+)
XLOC_003110 NA non-coding downstream 330607 489935 ~ 494533 (+)
XLOC_003112 NA non-coding downstream 384020 543348 ~ 544194 (+)

Expression


Co-expression Network