RNA id: TCONS_00006149


Basic Information

Item Value
RNA id TCONS_00006149
length 1067
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_003109
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 474380 ~ 504829 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacacacactcctgcggTGTGTTGTCCCCGCCTCTGTCTCTATGAGTGAGTGCATTTGAGACGTCCTGGGATTTATTCAGAGAAAGCCTCCTCCATCTGATCTGCTCCACTGCACCATTTCTGAGCACAAGTGCCATTTTGTGGGATTTACACAGTAAATAAAGGCCCACATGATTTGTCTTCCCCTGCAGTAGAGAATGGGTGCGGAGAGAAATGATGAAGGAGAGCGTCTGCTGGATATATGGCTGGATATGAGGAGATAATCTGACATGGATTTCAGCAGCTCTTCTTGACTTTAAGTTTCTCCTTGTCCGTCAGACCCAGTGGACTCTTCATATCTGCTGCAGAGTGTTTATCTGTTTTACAAGCAGCTTTGCATCAGTGTCTCTGGCATAGAAATCAGACACACTTACAAAATTAATCTGCCGCTAGAACTTGAATTTTGTGACTAATTTGTGACATTTAACCCAATTTACATATGGAGCAGTTCAGTGTATGGttataaacaacaataaatgagTATGAATGAGATATGAAGCATGGGGTTCAAATCCAACTGTAAATtgtaatacagtatattatagtATGAAAGTACTGAATATAGACACAAGATCTCCTTCAGGCTGCAGATTTTCAACATGTACAGCTGATTGAAATGGATTAATTATTGCCCTGATCATGCAAATCAGCATTTCAACTGTTGAAGTATTTTCTTGTAACCATTTCCTGAATGTTTTGCTCATGCACTGTTCAACAACAtctgtaaatcagcagttttccacattttctgactaatatttttattttccctgtttttttctgtgtttgagttgcattatgggatcttgaccTTTTCTCTAACAACTTTCAACCTGTAAAAGTGTGTTCAAGTGTGTGTTCTGcatgtgtaatagtgtgcagtgctgtattgtgtgtgttggtgttgtacaTTACGCTACAGaagccttgtaataaactgcagcacatttactCTTATTctacacacttatttctctacatattattctctcttatacattatattattattttaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008506 lncRNA upstream 7121 489935 ~ 494533 (+) True XLOC_003110
TCONS_00006146 lncRNA upstream 145394 355307 ~ 356260 (+) True XLOC_003106
TCONS_00008505 lncRNA upstream 202555 298450 ~ 299099 (+) True XLOC_003104
TCONS_00008503 lncRNA upstream 334830 96979 ~ 166824 (+) True XLOC_003101
TCONS_00006151 lncRNA downstream 32193 537022 ~ 539607 (+) True XLOC_003111
TCONS_00008508 lncRNA downstream 38519 543348 ~ 544194 (+) True XLOC_003112
TCONS_00006160 lncRNA downstream 209889 714718 ~ 718375 (+) True XLOC_003117
TCONS_00006167 lncRNA downstream 1017298 1522127 ~ 1524414 (+) False XLOC_003124
TCONS_00006170 lncRNA downstream 1020081 1524910 ~ 1526754 (+) True XLOC_003124
TCONS_00006148 mRNA upstream 51555 440305 ~ 450099 (+) True XLOC_003108
TCONS_00006145 mRNA upstream 141337 355305 ~ 360317 (+) False XLOC_003106
TCONS_00006144 mRNA upstream 161807 329687 ~ 339847 (+) True XLOC_003105
TCONS_00006143 mRNA upstream 179407 296515 ~ 322247 (+) True XLOC_003103
TCONS_00006142 mRNA upstream 179408 296437 ~ 322246 (+) False XLOC_003103
TCONS_00006150 mRNA downstream 1636 506465 ~ 540252 (+) False XLOC_003111
TCONS_00006152 mRNA downstream 70836 575665 ~ 580833 (+) False XLOC_003113
TCONS_00006153 mRNA downstream 72263 577092 ~ 580690 (+) True XLOC_003113
TCONS_00006154 mRNA downstream 78313 583142 ~ 587187 (+) False XLOC_003114
TCONS_00006155 mRNA downstream 78896 583725 ~ 589128 (+) True XLOC_003114
TCONS_00006147 other upstream 130214 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006161 other downstream 225978 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006169 other downstream 1017350 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 1041288 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 1685792 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006215 other downstream 2128962 2633791 ~ 2649394 (+) False XLOC_003150

Expression Profile

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