RNA id: TCONS_00006154


Basic Information

Item Value
RNA id TCONS_00006154
length 2202
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_003114
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 583142 ~ 589128 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtttccagcattcttcaaactatcttcttttgtcttctacagaaaacagaaacacaaacaggtttggaagaagCGAAGGGTGAGTACATGGAGACAGAATGTTGACTGCGAATatccttttaaagggatagttcaccccaaaaaatactcactatttactcgcaGTCAAGTGCTTTCAAacccttatgagtttctttctcctgttggaaacaaaagaagatattttgaaaaaggttAGAAAGATTTAGAACCATTACCATAGACAGTAGAAAcgacaaatacaatggaagtcaatggttacaggttttcagcaccGGATGAAGTGAATGACGACAGTGTTAGCTATGGATTTGGAAATGATATCGGTGTTTTTCCAGCTTCTCTCAGCAGCAGCACGTGAGCTCTGATGATCATTAATGAAGTGGCCATCATGCAAACAGATCCTACAGGGCTTCTGTCATCTGTAAGCTGATCTGCACACGTGACGTgatccactcacacacacacacgctgatctGCTGTTCTCTGTGCGCTCCTGCATTAGTGCAGATCTCTCCGTGTGTTCATGTAGAGTCTCCACCCATGGAGAAGAGCGTGATCAAATTCAGCCACTGCCACAGGGACATCTTCTGCTTCTTCGTGCCGGATCAGTGTCCCGAATGTGGGGAGAGTTTGAGCGGGAAGCGGCTGGAGGAGGCGCCCGTCTCCATCCCAAACCCCTTCAGCAACGGACACAAAACCCCATGTGCTTTTCTGGTGGCGTCAGCTGAAGACCGGCTGCTCAGGGACTTTGATGGACAATCTGATCTGCATACAGGAATCACCAACACAAATGGCGTGGTGTATAATTACACATGTGCGGGTGTGCAGAGGGAGACTCAGGGCTGGGAGCGCTGCATCTGTGTGCCGCTGGTGCAGCCGGATATGTTCAGTCTGATCAGCCAATGGGATCAATATCTGGAGAAATTCTCCACCGCTCAGATGTGGGACCCGCTCTGGCAGAGCTTTAATGAAGAGAGCCACAACTGCTTCAGCTTCACACTGATGTTCATCAACTGTGTTCTGGCCACGCAGTCCAAGCGCGCGCTCAGCAAAGATGAGTTCACACACTCGTTCGTGCTCCCTCGCATTAAAAGAGCCTCCAAATACATGATGCTGTGCAGCCAGATAACCCAGAACCACTTCTACATCGTCAACAACCCGAGGAGAAACTCTCAAGACGACCCAATGGAGGAAAACCACAACTGATGGAGCTGCACTGCAAAACAACACTCAGTATATTCATACATCTTGTATCAAGGTGACAGTGAGTCATGATGTGCCTGATAAACACAAGTACACCGCTGGACACGCTTTACTACTGAGATATCTGCATTTATCGCACCCACAGTACGTCAAATGAGCTCAAACATGGGCtatcaattgatttatttatgggGTCAACTGTTCCATGCAACATAGTCtccttctgaaaacgtagccctgtgtATACATCTAGAGACGGTGAATTATGCAGCTAGGGgaacgtacggctgcatttagtCTATAAAACGAACTCTACAGGACGGTATGACGGCGTTCCCTTTTACGCTTACCAGAACTTGCTGACTCAAAAAGCgtgcacagcagcctctggtgcatttgcaaaaactgcaaaaaaacaccccccccccgggatgtatttggcgctctccggaaatgtatacaggggcaCGTAATCTGAATGCGCCTGGGTTGGTTCCGTGTGTAACTTGACCATTTAACTACAagtaacttagtttaataagttgtAATTAATGTAAAAGCACATGCAGCGATCATAATAAAGCAGTTTCTCCCTCACAGCTCTCTCTTCTGCAGTCATATTCTCTCCAGGATGCTGCGCAGAtgcagattagtcagtactgatgaACTAAAAAGATGAAGATCACAGTCTGAAAATGAGTGCGTGTAAATTAAGATGATCAGGGAAAAATAGCACATAAAATTGTaatgaggaaaaatcaagaaaaagaatttaaaaaaatataaagtttaGTGGTAATAGTGTAGTTTTGTCAATCATATTTGCAATAGCTAGCTTTAATATAAGTGCATTATCTTTATATTCCTGAAGATGTTCAGTGaacactcttattttaatggatttaactgtttaataaaacaggtgacgcagtgggtagcacattcgcctcacagca

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-87 Orthologous to human MKRN2OS (MKRN2 opposite strand).

Ensembl:

ensembl_id ENSDART00000168157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008508 lncRNA upstream 38948 543348 ~ 544194 (+) True XLOC_003112
TCONS_00006151 lncRNA upstream 43535 537022 ~ 539607 (+) True XLOC_003111
TCONS_00008507 lncRNA upstream 78313 498446 ~ 504829 (+) False XLOC_003109
TCONS_00006149 lncRNA upstream 78313 501654 ~ 504829 (+) True XLOC_003109
TCONS_00008506 lncRNA upstream 88609 489935 ~ 494533 (+) True XLOC_003110
TCONS_00006160 lncRNA downstream 127531 714718 ~ 718375 (+) True XLOC_003117
TCONS_00006167 lncRNA downstream 934940 1522127 ~ 1524414 (+) False XLOC_003124
TCONS_00006170 lncRNA downstream 937723 1524910 ~ 1526754 (+) True XLOC_003124
TCONS_00008509 lncRNA downstream 1026213 1613400 ~ 1615142 (+) True XLOC_003129
TCONS_00008376 lncRNA downstream 1348497 1935684 ~ 1937142 (+) False XLOC_003132
TCONS_00006152 mRNA upstream 2309 575665 ~ 580833 (+) False XLOC_003113
TCONS_00006153 mRNA upstream 2452 577092 ~ 580690 (+) True XLOC_003113
TCONS_00006150 mRNA upstream 42890 506465 ~ 540252 (+) False XLOC_003111
TCONS_00006148 mRNA upstream 133043 440305 ~ 450099 (+) True XLOC_003108
TCONS_00006145 mRNA upstream 222825 355305 ~ 360317 (+) False XLOC_003106
TCONS_00006156 mRNA downstream 104547 691734 ~ 701305 (+) True XLOC_003115
TCONS_00006157 mRNA downstream 118540 705727 ~ 711032 (+) True XLOC_003116
TCONS_00006158 mRNA downstream 127199 714386 ~ 718541 (+) False XLOC_003117
TCONS_00006159 mRNA downstream 127199 714386 ~ 718748 (+) False XLOC_003117
TCONS_00006162 mRNA downstream 182436 769623 ~ 772459 (+) True XLOC_003119
TCONS_00006147 other upstream 211702 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006161 other downstream 143620 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006169 other downstream 934992 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 958930 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 1603434 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006215 other downstream 2046604 2633791 ~ 2649394 (+) False XLOC_003150

Expression Profile

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