XLOC_031248 (wdr44)


Basic Information

Item Value
gene id XLOC_031248
gene name wdr44
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37316683 ~ 37341044 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060683
ATGGCGTCCGACACCAGCGACACGGAGGAGTTTTACGATGCGGCGGAGGATGTCAACTTCACTCCCTCGCCCCACGCGTCACCTGCAAAGTTTGAACTTCCTCAGCCTGGGGGTCCCACAGAGAGTGTGGTACAGGAAGTTGCTGCTGGATTAGCTCAACCAGAACCCCGTCATGATGATTCTCTTCAGATCATTGACAGTATTATCGAGGAGAGTCAGAAGAGTGGTGTTGAGGAAGAGTTGTTGAGAACAGAAGACACCTGTGAAGCCAGTTCTGAAGGGGAGAAGCCAGAAGCAGAGGACTGTAGTGTTGAAGAAACCCCAGCTCCTGAGGTTCTTGTGGTGGTGCTTCCGGAGGATCCCGATGTGACTCCACGTGACTCTGGTTGCACTGAGCAGGTGCCCGATGTAAGACCGAGGGAAGTGAGGCCACAGGACATTCATGATATAGCACCGGATGTGGCGGGTTCTGCTCAAGTGGGTCAAGACCAGGGTATCCCACCTCCTCCTGACATTACCAGTGCTCTGGGTCAGCCATCGCTACCTGTTTCCCTGCCCTGTGCAGAGACGGCTGATATTCTAGAGCAGGTTTCTACGTCTGATGGCGATGGGCCCGGCCCTTCCAAACCTCCCAGACAGTTTACAGTGGAGCCTGACATTGTAGCGAGCACTAAGAAGCAACCGCCCTCAAGGCCGCCTCCACCCTCCGGGGCTCCTCCTCCTCGGCCGCCTCCCCCATCACGACCCAGCTTTTCAGCTAGCAAAAAGTCCCAGGAAGCGATTCGACCAACAGGACTTGAAGtcTCTATAGAGCCAGCAGAAGAGCTGTGTGGATTGGTCAGCCCGAACGCCACAGTCCGATGCATTACTAAAGAAGTCCAGCACTCCTTGGACCTTGCTAGCGCCACTAGTGGAGATAAAGTCGTCACTGCACAGGAAAATGATGAGCAGGCATCAAGTCCTAGTGGTGCTGAGACTGCTGGACCCCAAAGACCAAGGTCTAACTCGGGCAGAGAGCTTACAGATGAGGAGATTCTTGCGAGTGTGATGATCAAGAATCTGGACACTGGTGAGGAGATCCCTCTGATCCAGGCTGAAGAGAAACTACCCACTGGAATCAACCCGCTCACACTGCACATCATGAGAAGAACCAAGGAGTACATCTCAAACGACGCAGCACAGTCggatgatgatgataaatccCAGCCTGCCCTTACTGACACAGATGGAGGGAAGCTGAAACAGAGAACAACACAGCTAAAGAAGTTTCTGGGTAAGTCAGTAAAGAGGGCGAAACACTTGGCAGAGGAATATGGAGAGAGAGCTGTGAATAAAGTGAAGAGCGTTCGAGACGAGGTCTTCCACAACGACCAGGATGACCCATCCTCCAGTGATGACGAAGGGATGCCGTACACACGACCGGTCAAATTTAAAGCGGCTCACAGCTTCAAAGGGCCCTTTGACTTTGACCAAATCAAAGTGGTGCAGGACCTGAGCGGAGAGCACATGGGTGCCGTCTGGACAATGAAGTTCTCTCACTGCGGACGGCTATTGGCAACAGCAGGCCAGGATAATATAGTTCGGATCTGGGTCCTCAAAAATGCCTATGACTATTTCAACAACATGAGAATAAAATACAACACAGAAGGACGTGTGTCACCGTCTCCCTCTCAGGAGAGTCTGTGTTCCTCTAAATCAGATACAGAAGGAGGGTTTGGTGCTGCTGTGGAAGATGCAGACACGGAGGACAGAAACGTCCCATTCCGGCAGGTTCCTTTCTGCAAGTACAAAGGTCACACCGCTGACCTGCTAGATCTGTCCTGGTCAAAGAACTACTTCTTGCTGTCATCATCAATGGACAAGACGGTTCGCTTGTGGCACATCTCCAGGAGAGAGTGTCTGTGCTGTTTTCAGCATATAGATTTTGTTACAGCGATTGCATTTCATCCTAGGGATGACAGGTATTTTTTGAGCGGTTCTTTAGATGGAAAGCTGCGGTTATGGAATATTCCTGATAAGAAAGTGGCGCTGTGGAATGAGGTGGATGGACAGACGCGTCTGATAACAGCAGCTAACTTCTGCCAGAATGGAAAGTATGCAGTAATTGGCACCTATGATGGGCGCTGCATTTTCTATGACACCGAGCGCCTTAAATATCACACCCAAATCCACGTTCGCTCCACAAGAGGCAGGAATCGAGTAGGCCGCAAAATCACCGGCATTGAGCCACTGCCAGGAGAAAACAAGATCTTGGTGACGTCAAACGACTCCCGCATTCGCCTGTATGACCTCAGAGATTTGTCACTGTCTATGAAGTACAAAGGCTACGTGAACAGCAGCAGTCAGATCAAAGCCAGCTTCAgTCACGACTACTCTTACATTGTGAGCGGCTCAGAGGACAAGTATGTGTACATCTGGAGCACGTACCACGACCTCAGCAAGTTCACCTCTGTACGGAGAgaccgcaatgacttctgggaagGGATCAAAGCTCATAACGCGGTTGTGACATCGGCCATTTTTGCTCCTCATCCGGATCTCATCGTGCCTCAGGAAGCAGGCTCCGAAAAACCCGACTCGGACTGTAAGAGCGACAGCACAGACGACTCGGAGACCATCCCATCAGGGGCGCTGAAAACAGACCACTCTGAAGTTCTGCTCTCTGCTGATTTCACCGGAGCCATTAAAGTTTTTGTCAATGTTAAGAAATATTGA

Function

symbol description
wdr44 Predicted to be located in Golgi apparatus. Orthologous to human WDR44 (WD repeat domain 44).

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9549 Predicted to be located in Golgi apparatus. Orthologous to human WDR44 (WD repeat domain 44).

Ensembl:

ensembl_id ENSDARG00000060249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060683 True 2715 mRNA 0.51 19 37316683 37341044

Neighbor

gene id symbol gene type direction distance location
XLOC_031247 NA coding downstream 44372 37266944 ~ 37272311 (-)
XLOC_031246 lrch2 coding downstream 52188 37132016 ~ 37264495 (-)
XLOC_031245 il13ra2 coding downstream 198905 37101393 ~ 37117778 (-)
XLOC_031244 ftr99 coding downstream 269517 37040853 ~ 37047166 (-)
XLOC_031243 h3f3c coding downstream 367207 36944533 ~ 36949476 (-)
XLOC_031249 NA coding upstream 139403 37480447 ~ 37483020 (-)
XLOC_031250 NA coding upstream 251232 37592276 ~ 37603735 (-)
XLOC_031251 NA coding upstream 367658 37708702 ~ 37711850 (-)
XLOC_031252 AL935065.1 coding upstream 476826 37817870 ~ 37820878 (-)
XLOC_031253 arhgap35b coding upstream 523661 37864705 ~ 37881345 (-)
XLOC_031242 BX927323.1 non-coding downstream 372708 36934568 ~ 36943975 (-)
XLOC_031240 NA non-coding downstream 409304 36903146 ~ 36907379 (-)
XLOC_031238 NA non-coding downstream 487610 36821874 ~ 36829073 (-)
XLOC_031231 BX005476.1 non-coding downstream 1493135 35823418 ~ 35823548 (-)
XLOC_031259 BX640520.1 non-coding upstream 694293 38035337 ~ 38038217 (-)
XLOC_031269 NA non-coding upstream 909000 38250044 ~ 38255744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_07619613_07632295 WDR44 coding CI01000039 null 7618880 ~ 7632295 (-)
bowfin (Amia calva) AMCG00021216 LOC104946895,LOC104946900,LOC104948975 coding CM030130.1 CM030130.1 9483418 ~ 9514021 (-)