CI01000039_07619613_07632295 (WDR44)


Basic Information

Item Value
gene id CI01000039_07619613_07632295
gene name WDR44
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7618880 ~ 7632295 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_07619613_07632295.mRNA
GTCACCTGCAAAGTTTGAACTTCCTCAGCCAGGGGGTCCTGCAGAGAATGTGGTACAGGAAGTCACTGCTGGATTGGCTCAGCCAGAACCACGGCATGACGATTCTCTTCAGATCATTGACAGTATTATAGAGGAGAGTCAGAAGAGTGGAGTGGAAGATCAGTTGTTGAGAGGAGAGGAGACCTGTGCAGCCTCGTCTGAAGGAGAGAAGGCAGAAGCAGAAGGCTACAGTGTTGATGAAAACCTGGTTCCCGAGGTAGCTGAGGTGCCTCCAGAAGATCCTGATGTGACACCACATGACTCTGGTCGCACTGGGCAGCTGCCTGATGTAAGACCAAAGGAAGTGAGGTCACAGGGCATTGAGGACAGAGCACCAGATGTGGCTGGTCCTGCCCAAGCGGGTCAGGACCAGGCTATGCCACCCCCTCCTGACATTACAAGTGCTTTGGGTCAACCATCGCAACCCGCCTCCCTGCCCTGTGCAGAAACTGCTGATATTCTAGAGCAAGTCCCTATGACTGATGCAGATGACCCTGGCCCTTCCAAACCTCCCAGACAGTTTACCGTGGAGCCAGACATTGTAGCTAGCACCAAGAAGCAACCTCCTTCAAGGCCACCTCCGCCCACTGGGGCTCCACCTCCTAGGCCGCCTCCCCCCTCAAGGCCCAGCTTTTCAGCTAGTAAAAAATCCCAGGAAGTGATACGACCAGCAGGGCTAGAAGGCATCTCCAAAGATATCGCTGGTTTAACAAAGCCAGCGGATGAGCTGTGTGGATTGATCAGTCCAAATGCCACAGTACGATGTATTACTAAAGATCTCCAGCACTCCCTGGATCTCGCTAGCGCCACTAGTGGTGATAAAGTGGTCACTGCACAGGAAAATGATGAGCAGGCATCAAGTCCCAGTGGCAGCGAGACCCCTGGACCTCAAAGACCAAGATCTAACTCGGGCAGAGAGCTTACGGATGAGGAGATTCTTGCGAGTGTGATGATCAAGAATCTGGACACTGGTGAGGAGATCCCTTTGATCCAGGCAGAAGAGAAACTACCCACTGGAATCAACCCACTCACACTGCACATCATGAGGAGAACCAAGGAGTATATCTCAAATGATGCAGCACAGTCGGATGATGATGATAAGTCCCAGCCTGCCCTTTCAGACACAGATGGAGGGAAACTGAAACAGAGAACTACACAGCTGAAGAAGTTTCTGGGCAAATCGGTGAAGAGGGCGAAGCACTTGGCGGAGGAATATGGAGAGAAAGCTGTGAATAAAGTCAAGAGCGTTCGGGATGAAGTATTCCACACGGACCAGGACGACCCATCATCCAGTGATGACGAGGGGATGCCGTACACCCGACCAGTCAAGTTTAAAGCAGCTCACAGCTTCAAAGGGCCTTTTGACTTTGACCAAATCAAAGTAGTGCAGGATCTGAGTGGGGAGCACATGGGTGCTGTCTGGACAATGAAATTCTCTCATTGTGGGCGGCTGTTGGCTACAGCAGGGCAGGATAATGTGGTTCGGATTTGGGTCCTAAAAAATGCCTATGACTATTTCAACAACATGAGAATAAAATACAACACAGAAGGACGTGTGTCCCCGTCTCCCTCTCAGGAGAGTCTGTGTTCCTCTAAATCAGATACTGAAGGAGGGTTTGGTCCTGCAGTGGAAGATGCAGACACTGAAGACAAAAATGTGCCATTCCGGCAGGTTCCGTTCTGCAAGTACAAGGGTCATACTGCTGACCTGCTGGATCTGTCCTGGTCAAAGAACTACTTCCTGCTGTCATCATCGATGGATAAGACGGTTCGTTTGTGGCACATCTCCAGGAGAGAGTGTCTCTGCTGCTTTCAGCATATAGACTTCGTTACAGCCATTGCATTTCATCCCAGGGATGACAGGTATTTTTTGAGCGGTTCTTTGGATGGAAAGTTGCGGTTATGGAATATTCCAGATAAGAAAGTGGCACTGTGGAATGAGGTAGACGGACAGACGCGTCTGATAACAGCAGCTAACTTCTGCCAGAATGGAAAATATGCGGTTATCGGCACCTACGATGGGCGCTGCATTTTCTATGACACAGAGCGCCTTAAGTATCACACCCAAATCCATGTTCGCTCCACGAGAGGCAGGAATCGTGTGGGCCGCAAAATCACCGGTATTGAGCCGCTTCCAGGAGAGAACAAGATCTTGGTGACGTCAAATGACTCTCGCATTCGCCTGTATGACCTCAGAGATTTGTCTCTGTCTATGAAGTACAAAGGCTATGTGAACAGCAGCAGTCAGATCAAAGCCAGCTTCAGTCACGACTACTCTTTCATTGTGAGCGGCTCAGAGGACAAGTATGTGTACATCTGGAGCACATACCACGACCTGAGCAAGTTCACCTCTGTGCGGAGAGACCGAAATGACTTCTGGGAAGGGATCAAAGCTCATAATGCGGTGGTGACTTCGGCCATTTTTGCTCCGCATCCGGATCTCATCGTGCCTCAAGAGGCAGGGACAGAGAAGGTAGACTCAGACTGTAAGAGTGACAGCACAGACGACTCTGAGACCATCCCTTCAGGGGCGCTGAAAACAGACCACTCTGAAGTTTTGCTTTCTGCTGATTTCACCGGAGCCATTAAAGTTTTTGTCAATGTTAAGAAATACTGAGTGCTTGTGCTGAAATATGACACCCAGCAAGTATATATAATAATTTAAAAGCTCCTCTCAGCTTTTGGACAGAGTTAAAGCAAAATCAGTGCCACTTTACATTTAACTGAGCCCCCATTCATTGACCAATCAGCTGCTGGAGAGTGCTCTGAGAGGCGGAGATTATAAGCCCCGCCTTATTCGCAGAGAACAGGGACCCAGGAAGTTGGAAGGCGGGGACAGTTGAGGAGCAGGGACAGACCTAACAGCTAAACGCATCTTTCTTTACCTTCCTTTCTTTTTAATTTGACTTTCTTTGGAGAGATATTGTTGTATTGTTACTGTACATACACAAAAGGGCTTTAATTGCACAGATCAATGATGCCATTTTAATGGATGAGTGAAACTGCAAGCCTGTATGGAGATAGAATGGATTTGAGTCACAGGTGGTCAGCCCTTCATACACACACACACACACAAACACAAACACACACACTGACTTTAATTCCCCCTCCACACCTTAACCCCAAAGTTGATGTTTCTGGAAAACAATATGAGCACTAACTAAACTCATTTCAATTTAAAAATCTTGGTCAGTGTTATTTTGTTGTAAAAATAATTGAACTTGATTTTTTTATGTGTATGACTCCAGAAATAAATTTAAAAAAAATTATATAAAGATTTTCCCTTGTGTTGTTTTGATCTCTGTGTATGCAGTAAAATGTTTTTCACTGAGATATGTGAGCAAAATAAA

Function

symbol description
wdr44 Predicted to be located in Golgi apparatus. Orthologous to human WDR44 (WD repeat domain 44).

GO: NA

KEGG:

id description
K20241 WDR44, RAB11BP; WD repeat-containing protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_07619613_07632295.mRNA True 3389 mRNA 0.48 18 7618880 7632295

Neighbor

gene id symbol gene type direction distance location
CI01000039_07592640_07593317 NA coding downstream 23827 7592548 ~ 7595053 (-)
CI01000039_07523213_07573865 LRCH2 coding downstream 42729 7523197 ~ 7576151 (-)
CI01000039_07498583_07505779 NA coding downstream 112278 7498503 ~ 7506602 (-)
CI01000039_07450597_07454594 NA coding downstream 164250 7449808 ~ 7454630 (-)
CI01000039_07401817_07402410 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding downstream 216241 7400571 ~ 7402639 (-)
CI01000039_07658015_07658757 NA coding upstream 25245 7657540 ~ 7659052 (-)
CI01000039_07781930_07783389 NA coding upstream 149595 7781890 ~ 7783694 (-)
CI01000039_07908291_07909766 NA coding upstream 275609 7907904 ~ 7910468 (-)
CI01000039_07952703_07961286 NA coding upstream 319991 7952286 ~ 7962019 (-)
CI01000039_07987279_07996351 ARHGAP35 coding upstream 354917 7987212 ~ 7996921 (-)
G183154 NA non-coding downstream 23522 7595124 ~ 7595358 (-)
G183151 NA non-coding downstream 122554 7496060 ~ 7496326 (-)
G183150 NA non-coding downstream 122869 7495765 ~ 7496011 (-)
G183143 NA non-coding downstream 133395 7485119 ~ 7485485 (-)
G183142 NA non-coding downstream 134072 7484577 ~ 7484808 (-)
G183212 NA non-coding upstream 102248 7734543 ~ 7734910 (-)
G183214 NA non-coding upstream 138134 7770429 ~ 7775182 (-)
G183231 NA non-coding upstream 144433 7776728 ~ 7777392 (-)
G183232 NA non-coding upstream 146036 7778331 ~ 7778642 (-)
G183233 NA non-coding upstream 147768 7780063 ~ 7780273 (-)
CI01000039_07134422_07137732 NA other downstream 481113 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 970304 6646544 ~ 6653449 (-)
G182827 NA other downstream 983680 6634547 ~ 6635200 (-)
G182771 NA other downstream 1110447 6507955 ~ 6508433 (-)
G182470 NA other downstream 1982116 5636058 ~ 5636764 (-)
G183261 NA other upstream 339821 7972116 ~ 7975045 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031248 wdr44 coding NC_007116.7 CM002889.2 37316683 ~ 37341044 (-)