XLOC_003125 (ift52)


Basic Information

Item Value
gene id XLOC_003125
gene name ift52
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1533097 ~ 1546015 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006171
CACAATGCATCGCTCGCGGCCGCTACAGCATGTATAATTCTGCGGaaacttttattaatttgtttgtttttagtcaCATCTATTATTTAACAGGATGTAAGTTCGCATTATAACTCCCCACAGCACATTTAAAGCCTCTGCTCTAACGGATTCGACCGGCAGAGATTAGCGTTAGCCTGCTAGCTTATAGCCGCGCATAACGGTGACGTGCTGCACCacaatatttatagtttatacatgttttaaagatgttgcttcTGCTTTAATTTAACGCTAGAGTTGTCTTAACTGGATAATGTACAGATCTGTCACTATATATTGTCTGTGATGCGCAAGAAAACAGAAGAGTGTAACGTTATATTAACATTAGCGAAGGTAAACAGCAGCTCCTCCGTCTTCAGGGTTTGGATCTGTAATTGATCCTGATTATACAGCAGCATGGACAAAGAGCAAAGAAATATCGTTGTTTTCAACGCATCCAAGAGAGAGCTTTTCACCAGCAGCTCAGGATACAAGTCCTTACAGAAGAAACTCCGAGCTCAGTGGAAGATTCAAAGCATTAAAGAGGAGCTGACGTTGGAGAAGCTCCAGGGAGTGAAGTTGTGGATCACCGCAGGTCCTCGAGAGAAGTTCACTGCTGCTGAGTTGGAGGTTCTTAAGCAGTATCTGGACAGTGGTGGAGCTCTTCTGGTGATGCTCGGAGAAGGAGGAGAACTGAAATATGACACTAACATCAACTTCCTCCTGGAAGAATTTGGTATTATGGTTAACAATGATGCAGTGATACGGAATGTCTATTACAAATATTTCCATCCTAAAGAAGCGCTTGTGTCCAACGGTGTTCTCAACAGGGAGATCAGCCGTGCTGCTGGTAAAGTGGTCACAGGAGTGATTGATGAAGAAAACACAGGCAATAATTCACAGGCACTTACGTTCGTCTACCCCTATGGGGCCACGCTAAATGTGATGAAGCCTGCAGTGGCCATTCTCTCCACTGGATCTGTGTGTTTTCCACTCAACAGGCCTGTTCTGGCCTTCCACCACTCAAAGAACGCTGGCAAACTGGCAGTCCTGGGCTCCTGCCACATGTTCAGTGACCAGTACCTGGACAAGGAGGAGAACAGCAGGATAATGGATGTTGTTTTCCAGTGGCTTACAACCGATAGCATTCATCTGAACCAGATCGATGCAGAGGACCCAGAGATCACTGACTACATGATGCTGCCGGACACCGGGAGTCTGTCTGAACGCCTGAGAGTGTGTCTGCAGGAGGGAGACGAGAACCCGCGAGATTTCACATCTCTCTTCGACATGTCCTTGCTAAAGCtgcacacaaacactcttccttCTGTCCTGGATGCTTACAAGCAGCTGAATGTTAAACATGAGGCTCTCCAGCTGATCACACCACAGTTTGAAACCCCTCTGCCTCCTCTGCAGCCTGCCGTTTTTCAGCCGGCCTTTAGAGACCTTCCTCCACCAATGCTAGACCTGTTTGACCTGGACGAGACCTTCTCCTCTGAGAAAGTCCGACTTGCTCAGCTCTCCAATAAATGTACCGATGATGATCTTGAGTTTTACGTTCGTAAATGTGGAGACATCTTAGGAGTGACGGGGAATTTGGACAAAGACAAACGAGATGCCAAGCACATACTGGAGCACGTCTTCTTCCAAGTGGTGGAGTTCAAGAAACTCAATGAAGAGCACGATGTGGACACAGCAGAAGCGAGGTTCAGCATGTACTGAAGCAGGAGCTCAGGAGGGTTTATTTAGGAGATTTGTGTGTACATTATAGAGACTCAATCTGCAGTGGAGCTGTGAACACATCACTACCGGTGCAAGATAATGATCAGGTGTGGTTTATCAGATCTATAATTATGAACTTTTCAAGCCTATGCTTTAAGGAATGAACCTTTCTTGTAAGAGTTTTGTCAATAAATATGAGCTTTTGTATATCCACA

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0060271 cilium assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005814 centriole cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040614-3 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

Ensembl:

ensembl_id ENSDARG00000045025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006171 True 1961 mRNA 0.45 13 1533097 1546015

Neighbor

gene id symbol gene type direction distance location
XLOC_003124 srsf6b coding upstream 2232 1522127 ~ 1530865 (+)
XLOC_003123 acot8 coding upstream 12151 1512571 ~ 1520946 (+)
XLOC_003122 ppp1r3db coding upstream 120741 1409622 ~ 1412356 (+)
XLOC_003121 vgll4b coding upstream 717881 807153 ~ 815216 (+)
XLOC_003120 tamm41 coding upstream 742793 779754 ~ 790304 (+)
XLOC_003126 AL935272.1 coding downstream 102 1546117 ~ 1546231 (+)
XLOC_003127 mybl2b coding downstream 5588 1551603 ~ 1574656 (+)
XLOC_003128 si:dkey-40c23.1 coding downstream 29420 1575435 ~ 1582456 (+)
XLOC_003129 si:dkey-40c23.2 coding downstream 38732 1584747 ~ 1618087 (+)
XLOC_003130 lrp1aa coding downstream 82523 1628538 ~ 1864288 (+)
XLOC_003250 BX324177.11 misc downstream 9799788 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9826871 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9840347 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 9872018 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9883378 11429393 ~ 11429689 (+)
XLOC_003118 FQ311892.1 non-coding upstream 802174 730807 ~ 730923 (+)
XLOC_003112 NA non-coding upstream 988903 543348 ~ 544194 (+)
XLOC_003109 NA non-coding upstream 1028268 474380 ~ 504829 (+)
XLOC_003110 NA non-coding upstream 1038564 489935 ~ 494533 (+)
XLOC_003107 CR855375.1 non-coding upstream 1161657 371322 ~ 371440 (+)
XLOC_003132 NA non-coding downstream 389669 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 405616 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 644606 2190621 ~ 2190730 (+)
XLOC_003139 NA non-coding downstream 652515 2198530 ~ 2205798 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_05842522_05847302 IFT52 coding CI01000057 null 5842319 ~ 5847302 (-)
bowfin (Amia calva) AMCG00008209 ift52,LOC107730620 coding CM030123.1 CM030123.1 45498106 ~ 45503562 (-)