CI01000057_05842522_05847302 (IFT52)


Basic Information

Item Value
gene id CI01000057_05842522_05847302
gene name IFT52
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5842319 ~ 5847302 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05842522_05847302.mRNA
ATGAACAAAGAGCAACGAAATATCGTTATTTTCAACGCATCCAAACGAGAGCTCTTCACCAGCAGCTCTGGATACAAATCCCTGCAGAAGAAGTTAAGAGCACAGTGGAAGATTCAAAGCATCAAAGAGGAGCTGAGCTTGGAGAAGCTCCAGGGAGTGAAGTTATGGATCACTGCAGGCCCTCGAGAGAAGTTCACCGCTGCTGAGCTGGAGGTTCTGAAGCAGCATCTGGACGGTGGTGGAGGGATTCTTGTGATGCTCGGAGAAGGAGGAGAAATGAAATACGACACTAACATCAACTTCCTCCTGGAAGAGTTTGGCATTATGATAAACAATGATGCAGTAATAAGGAACGTCTATTACAAATATTTCCATCCCAAAGAAGCTCTCGTGTCCAACGGTGTTCTGAACAGGGAGATCAGTCGTGCCGCTGGTAAAGTGGTCACAGGGGTGATTGATGAAGAAAATTCGGGGAATAATTCACAGGCACTTACGTTCGTATACCCTTACGGGGCCACACTGAATGTGATGAAGCCGGCGGTGGCCGTCCTGTCCACTGGATCTGTGTGTTTTCCTCTCAACAGGCCTGTTCTGGCCTTCCATCAGCTGAAGAACGCTGGCAAGTTGGCAGTTCTGGGCTCGTGTCACATGTTCAGTGACCAGTACCTGGACAAGGAGGAGAACAGTAAAATCATGGATGTTGTGTTCCAGTGGCTCACAACCGACAGCGTTCCTCTCAACCAGATCGACGCAGAGGACCCGGAGATCACAGACTACACCATGCTGCCGGACACTGGGAGTCTGTCCGAGCGTCTGAGGGTGTGTCTGCAGGAGGGAGACGAGAATCCGCGAGATTTCACATCTCTTTTTGACACGTCTCTGCTGAAGCTGCACACAAACACTCTTCCCTCAGTCCTGGATGCTTACAAGCAGCTGAATGTAAAACATGAAGCTCTGCAGCTGATCACGCCTCAGTTTGAAACACCTCTGCCTCCTCTGCAGCCGGCCGTCTTTCAGCCGGCGTTTAGGGACCTTCCTCCACCCATGCTGGACCTCTTTGACCTTGATGAGACCTTTTCCTCTGAGAAAGTGAGGCTGGCTCAGCTCTCAAACAAGTGTACCGACGATGACCTTGAGTTTTATGTGCGTAAATGTGGAGACATCTTAGGAGTGACAGGGAAGCTGGACAAGGAAAAACGAGATGCCAAGCACATACTGGAACACGTCTTCTTCCAGGTGGTGGAGTTCAAGAAGCTCAATGTAGAGCATGATATCGACACCACAGAAGCACGGTTCAACATGTACTGATGCAGACCATGGAGCTGAGGAGTATCAGAACAAAGACTTGTTTTGGAGATGTGTGTGTGTATACAGTATAAACACTCAAACTGCAACCGGATCATATCCACATTGCTTCAAGAACAGTCAGGTGTGCTTCATCAGACCTCTCTTAAGTCGATGGTTTAAAGAATTCACAAGCTTTCTTGTAACATTTGAGTTTTTTCAATAAA

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

GO:

id name namespace
GO:0036064 ciliary basal body cellular_component

KEGG:

id description
K19681 IFT52; intraflagellar transport protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05842522_05847302.mRNA True 1511 mRNA 0.48 13 5842319 5847302

Neighbor

gene id symbol gene type direction distance location
CI01000057_05830634_05838724 MYBL2, MYBL2B coding downstream 3272 5830058 ~ 5839047 (-)
CI01000057_05827116_05827514 NA coding downstream 14805 5827093 ~ 5827837 (-)
CI01000057_05633248_05635383 MKRN2OS.2 coding downstream 206421 5633215 ~ 5635898 (-)
CI01000057_05553430_05562372 NA coding downstream 279871 5551558 ~ 5562448 (-)
CI01000057_05486207_05495209 TAMM41 coding downstream 346662 5486040 ~ 5495657 (-)
CI01000057_05849700_05856513 SRSF6 coding upstream 1804 5849106 ~ 5856513 (-)
CI01000057_05857113_05861024 ACOT8 coding upstream 9678 5856980 ~ 5862479 (-)
CI01000057_05925181_05926068 NA coding upstream 77769 5923540 ~ 5927295 (-)
CI01000057_05955545_05960873 EDN3 coding upstream 108236 5955538 ~ 5961098 (-)
CI01000057_05989326_06003691 NA coding upstream 141467 5988769 ~ 6004299 (-)
G246981 NA non-coding downstream 121713 5719791 ~ 5720606 (-)
G246946 NA non-coding downstream 275029 5564522 ~ 5567290 (-)
G246857 NA non-coding downstream 544231 5297832 ~ 5298088 (-)
G246780 NA non-coding downstream 558702 5086312 ~ 5283617 (-)
G247041 NA non-coding upstream 15483 5862785 ~ 5886376 (-)
G247058 NA non-coding upstream 40158 5887460 ~ 5890066 (-)
G247059 NA non-coding upstream 46963 5894265 ~ 5894570 (-)
G247060 NA non-coding upstream 47832 5895134 ~ 5895348 (-)
G247061 NA non-coding upstream 51040 5898342 ~ 5898933 (-)
CI01000057_04927533_04931127 CDK4 other downstream 910899 4927533 ~ 4931420 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 1944628 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3920898 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 4037166 1801528 ~ 1806454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003125 ift52 coding NC_007122.7 CM002895.2 1533097 ~ 1546015 (+)
bowfin (Amia calva) AMCG00008209 ift52,LOC107730620 coding CM030123.1 CM030123.1 45498106 ~ 45503562 (-)