XLOC_031382 (gas1a)


Basic Information

Item Value
gene id XLOC_031382
gene name gas1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 44455754 ~ 44496805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060880
ATGGCAACTTGTGCAGAATTGGTTCGGGGGGCGCGCGCATTCGTTTGGCCTTTCGCGTGTGCGCTCGTGTGTTTTTGCTGTTTTTCCATCGCCTCCTCCAACCACCACGGCGGTCGGTTAATTTGCTGGCAGGCGATATTTAACTGCCAGTCGGAGCCCGAGTGTCATTACGCGTATGACCAGTATCTGCACGCCTGCGAGTCGATCCTGAACGGCCAGAGGAGGAAGTGTCCGAGTCACTGCATCTCGTCGCTGGTGCAACTCAACCTGACCAAGAGCGGCCCGGCGCTGGAGGACTGTAGCTGCAACAAGGACCCGCGCTGCCGGGAAATCAAACGAGCCATCGAGCCTTGCCTGCCCAAAACGAGCAACATGGGCTGCACCGAAGCCCGGCGCCAGTGCGAGAAGGACAGCCAGTGCCGAAGCGCGATGGGCGATTATTTAGTGCACTGCGGGAAACTCTTCAGCGGCTCCAGCTGCTCGAACCAGTGCCGCAATGTCATCGCGTACATGCGCAAACTCCCCAAAGCTCAACTCCTGGATACTTGCGTGTGTGATGGAACGGAGCGGACTATATGCGAGTTTATCAAAACTAGTATGAGAACGCTTTGCTTTGACTCTCCCCCCGTGGACGAGGAGGGCTCCAGCGGTTTGGACGATGACGAGCCCGGTGATGAGGATTACCTAGAGCCAGAACCCACGAGGAACACAGTTCTCTCAGCCATCCCGGTGAGTGTCGTCACTTCAACCTTCATCAAAACCGCCATGCTGAGAATTTCCCTTTTGGTCCTCGCTTTCACACCTTCACAGTAGGTCATCCCTCCATTCTTCTTTTCATCTCTCTGTGTCCATATGGAAAGTGCAATCCAAACTCCCCCTCAGCCTCGACATGTAGTCTGTGTTAGCACATCCAGCTGAGAGAAAAGTCAACAGTCCTTTAATAGTTTTCATCGAGAGCCCTGCAGAGGAACTGGGCATGTGGGAATGGAAAGAGATATTGAAACGCAGCCAAATTCCATTTAAGTAAGTGTTTCAATTGTGTCAATTACAGAATGTGCAAGATTTCGGTCCAAAATCAAAGGTGTAAAAtgatttttcagatattttcaaTCAGGTTAAGTTCAGGACTCGGggctgccatttcattattttagtCTTTTCAGCTTCAGTTAACTGCTTTACAGgtattgtgaagtgctttgaaatatgcatttattcGGTGTTTGACGTGATCTTCACTGAAACATGACGAGAGGGTGGGACattgtgtagctcctccccctttgaAAAACAACAGATAGTGTTTTGGTTTATCACCACTTTACCAGTGAGactggttgagctcaagtgcatcgaatgaaaatgaaatgaaaagtaTCTTGAAGACGGCGGGACATTTGATCAGTTATGATTTGATGAGTacgtatgaggtgacgtgaataaaaccgttgatccatttag
>TCONS_00060881
GGAGTGAACAAGTTCGCAGCACTTTCCGCAAATCAGTATtcttcttttacttttttaatttaaaaaaatcatggaTTACTGGAAAAGATTTTCATAACTTCACCAATTGTGGAACAAAGTTTTTACATTCGGATGGACCTTGCACAAACATGATCTAAGCTGAGGGATTTTCCCTCACTAGATGCAATGGAAATATGAAACATATCTGCTTGAAACTGACCTGACGCCAGCCAAACGATCACACATTTTGATATGGCAACTTGTGCAGAATTGGTTCGGGGGGCGCGCGCATTCGTTTGGCCTTTCGCGTGTGCGCTCGTGTGTTTTTGCTGTTTTTCCATCGCCTCCTCCAACCACCACGGCGGTCGGTTAATTTGCTGGCAGGCGATATTTAACTGCCAGTCGGAGCCCGAGTGTCATTACGCGTATGACCAGTATCTGCACGCCTGCGAGTCGATCCTGAACGGCCAGAGGAGGAAGTGTCCGAGTCACTGCATCTCGTCGCTGGTGCAACTCAACCTGACCAAGAGCGGCCCGGCGCTGGAGGACTGTAGCTGCAACAAGGACCCGCGCTGCCGGGAAATCAAACGAGCCATCGAGCCTTGCCTGCCCAAAACGAGCAACATGGGCTGCACCGAAGCCCGGCGCCAGTGCGAGAAGGACAGCCAGTGCCGAAGCGCGATGGGCGATTATTTAGTGCACTGCGGGAAACTCTTCAGCGGCTCCAGCTGCTCGAACCAGTGCCGCAATGTCATCGCGTACATGCGCAAACTCCCCAAAGCTCAACTCCTGGATACTTGCGTGTGTGATGGAACGGAGCGGACTATATGCGAGTTTATCAAAACTAGTATGAGAACGCTTTGCTTTGACTCTCCCCCCGTGGACGAGGAGGGCTCCAGCGGTTTGGACGATGACGAGCCCGGTGATGAGGATTACCTAGAGCCAGAACCCACGAGGAACACAGGTTCTGCTTTTGTGGCATGCTCTGTTTTGACTGTGGTGGCATCCATTTTGGCTCTGGTGCCGCTACCTTGATCACTTTGAAGTCGAGATAATGATCTGCTCCAACGGCTGTTCGGGAATAGtgcattttaccttttttttcttctgctttccTGTTCTTTCACGGCAAGCTGTGTCAACATTTATTCCTTAACACTTTTTAGcttttgttaaaattttaaaCTAAGTAGTCCCATGCATATCGTAATTTTCTATTTGATTAGACGTTCATTAGTGAATGGTTggtacaaataaacaataacaacaaaacctAGCTATTGTAGTTTGACCATGATGACTACAAATTCACCATGGTTTGCTTCAGTTGTTAAAGTTTAACCACGGTATTAGTAGTTAAAACTAAACCACATACTACTTGTAACCACCACAACAAAAGCATGGTTACTGCACTTTTACTATAATAAAGCGTGGTAAATTTTTGTACCACTAAAAATCTAAAGTTATCAAATGCAAGTAGCAATTTTACTACTACCAACAACTGAAAGTAATGTGTAATGACAAGTCATATTGGCTACTGttggaagaaaaataaataaatacatatttaatttaaaagattAGAATGTAACCAGTTCAGTAGATTCTACTATGTATTTGACTTTTCATGTCAGTAATAATGGATTAGTTACGCGTCACTGTAATGCATGCATTCTGATGCCCTATGAACCCACTAAAATCCAAAAATAGTTACTGTTGGATTATTTGCTAGCAAACAAAAAAGTatgtcaaataataaaaatagatttaagTTGCTTTACTGAGTAAATGTTAATACAGCTTGACCAGATTTTTCTCCAAAGATTACAAGTTAAACTTTGTGTGACATTTAGTTGAATGTGGAAATTACCACATTGTAAACGTGTTTTGATTCACTATGCAAATTTACTGTTGCAGATTCGGCCCAGGTAAACAATGCCTTGTCTATTGTAATTGTCTATGATCAGCATAAAGTACTGATTCTGAAGATATTTAAGAGCAGGGATACAAAATATTTTAGGTCAGTCAACTGCCTTAAACACTAGCTTGCCTTATTCAAGTGCTATtttgtaaaatacaaatttatttccttaaagaTATAGAAAGAAAAGTTTATTTTGTTACCTAGACCTTTTAACAGTGAAAGTTGTAATTATAAAACTGTGCACTGCCAATGTAAAActagatttttaaatatgtaaagtattttttataaagtttcaAAAGACTTTGGATAAGTAACTTctgtaaaaaacaaaagtgtTGCTGGAATGAATGAGGAGTAGATCTCTATATTGCATTTGATAAATCTTCTAAAAAAAACTCCAAACCCAGAGACTCACAACAgagaactttatttttgtttaaaaagtaaaacaaagggTGATGATTCCAGCTTTAAAGGgaagttaaatgtttgttgtaattATTTGTCTTTTAAGATATTGTACAGTGTACAGATTTCCAGAGAATCTTTTAAATGTGTTATCTAAGATGAACTATTTACTGTGTAGAGATGTCTAAATCCACTGTATGACTGCCTCAGTGATGTTCTTTTTTATAGAAGGCATAAAAACTAAAGTACAAAG

Function

symbol description
gas1a Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; paraxial mesoderm; and somite. Orthologous to human GAS1 (growth arrest specific 1).

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050302-155 Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; paraxial mesoderm; and somite. Orthologous to human GAS1 (growth arrest specific 1).

Ensembl:

ensembl_id ENSDARG00000077298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060880 False 1461 mRNA 0.49 2 44455754 44496553
TCONS_00060881 True 2588 mRNA 0.39 1 44494218 44496805

Neighbor

gene id symbol gene type direction distance location
XLOC_031381 si:ch73-337l15.2 coding downstream 168767 44272964 ~ 44286987 (-)
XLOC_031380 DAB2 coding downstream 495782 43860564 ~ 43959972 (-)
XLOC_031379 si:ch211-204c21.1 coding downstream 596588 43849529 ~ 43859166 (-)
XLOC_031378 CR936462.1 coding downstream 607975 43822113 ~ 43847779 (-)
XLOC_031377 mccc2 coding downstream 636091 43808838 ~ 43819663 (-)
XLOC_031383 NA coding upstream 46838 44543643 ~ 44561944 (-)
XLOC_031384 NA coding upstream 98774 44595579 ~ 44599885 (-)
XLOC_031385 fbp2 coding upstream 317259 44814064 ~ 44829719 (-)
XLOC_031386 fbp1a coding upstream 336508 44833313 ~ 44843738 (-)
XLOC_031387 NA coding upstream 576374 45073179 ~ 45092014 (-)
XLOC_031375 NA non-coding downstream 659395 43795338 ~ 43796359 (-)
XLOC_031374 BX950211.1 non-coding downstream 727485 43728137 ~ 43728269 (-)
XLOC_031372 BX784028.1 non-coding downstream 974782 43480856 ~ 43480972 (-)
XLOC_031371 CU462817.1 non-coding downstream 1169788 43285851 ~ 43285966 (-)
XLOC_031389 NA non-coding upstream 1241049 45737854 ~ 45740296 (-)
XLOC_031393 CR854913.1 non-coding upstream 1549367 46046172 ~ 46046286 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_03352914_03354134 GAS1A coding CI01000039 null 3351530 ~ 3354476 (+)
rainbow trout (Oncorhynchus mykiss) G88580 NA non-coding NC_048565.1 CM023219.2 78682967 ~ 78683250 (+)
bowfin (Amia calva) G78198 NA unknown CM030129.1 CM030129.1 16057531 ~ 16060087 (+)
tiger barb (Puntius tetrazona) G65954 NA non-coding NC_056706.1 CM032075.1 21736032 ~ 21736355 (+)
mexican tetra (Astyanax mexicanus) G72338 etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093 non-coding NC_035904.1 CM008307.1 8664755 ~ 8782160 (-)