CI01000039_03352914_03354134 (GAS1A)


Basic Information

Item Value
gene id CI01000039_03352914_03354134
gene name GAS1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3351530 ~ 3354476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_03352914_03354134.mRNA
CTTTAAAAACCCATGCAGATTTAATGAGCATAGACGGAAACTCACGCTTAAGTTGCATAAAGATGGCTCGACTTAACACATATAAACATTTGACTCCAAATTAAAAGCTAGTTTACAACAGTCTGCAAGGAGAAATTGTTTTTTATGAATATCAAGACATTGTTTATATAAGAGAATCTCTTGCGTGCCCTTTGTAATCAAATTTTTTTTACTATACTATCGTACAAAAGTTTGGGGTTAGTGAGATTATTTAAAATAAATTTGTATTTTTATTTGGCAAGGACACATTAAATTGATCAAAAGTGACACTAAAGACATTTAAAATTTCAAAAATTTCTATTTAAATGATGTTCATGTGAACTTTCTATATAACAAAGAACCCCGAAAAATAAATGCATCACCGTTTCCACAAAAATATTAAGCAGCACAACCGTTTTCAACATTGATAATAATAATAAATGTTTCTTGAGCAGCAAATCAGCACAGAATGATTTCTGAAGGATCATGTGACACTGAAGAAAGGATTAATGGCTACTGAAAGTTCAGATTTGCCATATTATTTCATAATATTACTGTTTTACTGTACTTTAATGTAATATGCAGCCTTGGTGAGCATAAGAGCACTTCTTTCGAAAACAATAGGAAATCAACAATCTTATCTTACCAAAATTTTTGTGTGTGTACATGTTTTTCTGTCCTGGTGGAGACTGCAACCTGAATGCACACAGACTCATGGGGACTTGTGTCACCGTGGGGAGCTTATAAATCATACAGAATGTTTTTTGTTTTTTTGAAAAAATGCAGAAAGTTTTCTGTGATGTGTGGGTTTAGGGGTAGGGTTAGTCTGGGGTAGGGCATACAATATACAGTTTGTACAGTAAAACCATTAAGTCTATGGAGAGTCCCCACAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATTGACGGAAAATTGCAATTTATGCTTTTATCTTGTTCAGCAATACAGTTGCTGGCTGCTCATGAACAGTCATGCATAGTCACAAAATCAAATGCTGTGATACTGCCCAAGAACGCAAGTCATACATATTCGACAAAGTCTGAGAAACAACAGTATAGTCGGTCTTTCTAACTCACTTTCGGCTCTGAGGTAATCCAAACCTTTTGGAGAGAGACCATTCCTAAACCATCATGCCCCACCTCCATTTTCCCGCCCCTTACTTGACGTCGAGATTTGCAACAACAAACGGTCTGACCAATAGGAATCCCTAAAAGTTCCGCAGGAGTAGAATGGATAAAGCAAAACTAGCGGGTCAGAAAGGGGCCAGTGTGTGAATTTGAACGCCGTGTTATTATCTGTTCGCGTCCCTAAACGTACTTAATGACGGACGACAAGCGCACGCCCGTGAATTTATCTGTTCAGTCGGGGAAGCGTGATGTTAGCGCTCGAGCACATTTGGATGTGAGCAAGAGACGCGAAAGGACGAGCTCTTGTTTTTCCATCGCCTCGTCCAACCACCACGGCCGTCGGTTGATTTGCTGGCAAGCGATATTAAACTGCCAGTCGGAGCCCGAGTGTCATTACGCTTATGACCAGTATTTGCACGCCTGTGAATCGATCCTGACCGGCCAGAGGAAGAGGTGTCCCAGTCACTGCATCTCGTCGCTTGTGCAACTCAACCTGACCAAGAGCGGCCCGGCGCTGGAAGACTGCAGCTGCGCCTCGGACCCCCGCTGCCGGGAGATCAAACGATCCATCGAGCCGTGCTTGCCCAAAACCAGCAGCATGGGCTGCACCGAAGCCCGGCGCCAGTGCGAGAGGGACAACCAGTGCCGAAACGCGATGGGCGATTATTTATTCCACTGCGGGAAACTCTTCAGCGGCTCCAGCTGCTCGAACCCATGCCGCAATGTCATCGCGTACATGCGCAAACTACCCAAAGCTCAACTCCTGGATTCTTGCGTCTGTGATGGATCAGAGCGGACTATCTGCGAGTTTATCAAAACTAGTATGAAAACGCTTTGCTTTGACTCTCCCCCCGTGGATGAGGAAGGCTCCAGTGGGTTGGACGATGATGAGTCTGATGATGAGGATTACCCAGAGCCAGAGCCCACGAGGAACACAGGTTCTGCTTTTGTGGCATGTTCTGTTTTGACTGTGGTGGCATCCATTTTGGCTCTAGTGAAATCACTTTGAAGGCGAGTTAATAATCTGCTCCAACGGCTGTTCGGGAATAGTGCATTTTGTCAGTTTTCTCCTGTTTTACAATTCATTTATGGCAAGCTGTTATGGCAACATTTATTCCTTAAAACGATCTAGTCTTTGTTTTACACGGACTATTTTAAATTCAGGTAATCCAATAGTGACTATCAACTTTTGTTAGGTGTTCATTAGGTTCTAGTACTTGCTTTTAAGTTACTAGTAGCTATCCCAGAAGTAACTAGTTTATATCCCCCTTTTTTTAGTAACATTTCTTGTCTCACAAGTTACAATTGCTTTTACTGGTCATTTACAATGACACGTCAGTAAATTCCAGTA

Function

symbol description
gas1a Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; paraxial mesoderm; and somite. Orthologous to human GAS1 (growth arrest specific 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06232 GAS1; growth arrest-specific 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_03352914_03354134.mRNA True 2542 mRNA 0.42 2 3351530 3354476

Neighbor

gene id symbol gene type direction distance location
CI01000039_03181221_03188468 FBP2 coding upstream 162295 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 172257 3169850 ~ 3179273 (+)
CI01000039_02934780_02935076 NA coding upstream 416300 2934635 ~ 2935230 (+)
CI01000039_02740498_02764324 NPFFR2A, NPFFR2 coding upstream 586702 2740242 ~ 2764828 (+)
CI01000039_02724018_02725548 NA coding upstream 625866 2724018 ~ 2725664 (+)
CI01000039_03359162_03369982 NA coding downstream 4419 3358895 ~ 3370403 (+)
CI01000039_03454189_03458136 NA coding downstream 99564 3454040 ~ 3458140 (+)
CI01000039_03596770_03597721 NA coding downstream 241521 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 296960 3651436 ~ 3658264 (+)
CI01000039_03659569_03662364 NA coding downstream 305093 3659569 ~ 3662652 (+)
G179893 NA non-coding upstream 27923 3323338 ~ 3323607 (+)
G179883 NA non-coding upstream 70093 3280776 ~ 3281437 (+)
G179802 NA non-coding upstream 83302 3267812 ~ 3268228 (+)
G179876 NA non-coding upstream 84409 3266529 ~ 3267121 (+)
G179875 NA non-coding upstream 87427 3262870 ~ 3264103 (+)
G179909 NA non-coding downstream 17350 3371826 ~ 3372040 (+)
G179933 NA non-coding downstream 47558 3402034 ~ 3402456 (+)
G179900 NA non-coding downstream 54815 3409291 ~ 3410398 (+)
G179901 NA non-coding downstream 56531 3411007 ~ 3411431 (+)
G179899 NA non-coding downstream 57316 3411792 ~ 3414176 (+)
G179798 NA other upstream 219346 3129572 ~ 3132184 (+)
G179528 NA other upstream 852911 2497674 ~ 2498619 (+)
G178423 NA other upstream 2365778 966676 ~ 982406 (+)
G179903 NA other downstream 69561 3424037 ~ 3425555 (+)
CI01000039_04048342_04049635 NA other downstream 693817 4048079 ~ 4049972 (+)
G180149 NA other downstream 720400 4079419 ~ 4079563 (+)
G180156 NA other downstream 736522 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 869103 4223868 ~ 4224657 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031382 gas1a coding NC_007116.7 CM002889.2 44455754 ~ 44496805 (-)