G179903


Basic Information

Item Value
gene id G179903
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3424037 ~ 3425555 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204263
GATCAAGGCAGTATTTTTGAAAAATATGATTATTAATTTTTTTTATAGCTAGGTGGCACTCCGGTTTAGAGGGACTACTCAGCACTCATTAAGAGCTGATCAGAATGGTTGGATGCATTAAAAAGCTGAGTTTCTAAGCTTTAAAAATGATACTTATTTTGTGTTATTCCTGTCAGTGGCTGCTTAGTAATTTTATTATTAATTTTTTCCGGCGGTACACTTCGGGCTTGAAGGGTTAATTTTTTTTTTTTTTTTAAATACACGTAGGAGATTCAACTCAAGTTTACAAATCTTTTACAAGTTCCATTGCTAACTGTGACTGTTTCAAGCAGCTTCAACATTAGGGCTGAAAACGCTTGCCTTGTTTAGTTTAGTTTAGTTACTAACCTGATGCCGCAGGCAACCTGGTATGGCGTGGTCTTCCAGGACTCCCCATCTATTACTTTTCCATCGGGCAGCGTGATCTTGATGGGCTTGCTGTCTTTTGCTGCTTTCTCTGCCAGCAGGGCATCGTGTTCTGCCTTCAGTTTGTTATATATAGACAGACGCTCCTCGATGTACTGTGGTGGAGGACTCAACTCAGCCTTGCCACCTGCATCTCCACCAGCATTCTTGTTTTTCTTCTTTCCTCCATCTTTGCTATTCTTCTTCTCGTCCATTTTCAGAACCTTCATTTGTTCGGTCACGCTCTCATCCGCCATAATTAGACGAAAAATATCACAAGCACGAACACGTAACACGATCCAACGATTTACAGTTTAGCACAGTGCTTATTCAGGACACCGGCATACACGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU204263 True 797 TUCP 0.41 3 3424037 3425555

Neighbor

gene id symbol gene type direction distance location
CI01000039_03359162_03369982 NA coding upstream 53634 3358895 ~ 3370403 (+)
CI01000039_03352914_03354134 GAS1A coding upstream 69561 3351530 ~ 3354476 (+)
CI01000039_03181221_03188468 FBP2 coding upstream 234802 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 244764 3169850 ~ 3179273 (+)
CI01000039_02934780_02935076 NA coding upstream 488807 2934635 ~ 2935230 (+)
CI01000039_03454189_03458136 NA coding downstream 28485 3454040 ~ 3458140 (+)
CI01000039_03596770_03597721 NA coding downstream 170442 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 225881 3651436 ~ 3658264 (+)
CI01000039_03659569_03662364 NA coding downstream 234014 3659569 ~ 3662652 (+)
CI01000039_03665710_03683733 NA coding downstream 239692 3665247 ~ 3683850 (+)
G179899 NA non-coding upstream 9861 3411792 ~ 3414176 (+)
G179901 NA non-coding upstream 12606 3411007 ~ 3411431 (+)
G179900 NA non-coding upstream 13639 3409291 ~ 3410398 (+)
G179933 NA non-coding upstream 21581 3402034 ~ 3402456 (+)
G179909 NA non-coding upstream 51997 3371826 ~ 3372040 (+)
G179951 NA non-coding downstream 35035 3460590 ~ 3461396 (+)
G179959 NA non-coding downstream 62493 3488048 ~ 3488365 (+)
G179961 NA non-coding downstream 83852 3509407 ~ 3541121 (+)
G179963 NA non-coding downstream 91633 3517188 ~ 3518417 (+)
G179966 NA non-coding downstream 99533 3525088 ~ 3529519 (+)
G179798 NA other upstream 291853 3129572 ~ 3132184 (+)
G179528 NA other upstream 925418 2497674 ~ 2498619 (+)
G178423 NA other upstream 2438285 966676 ~ 982406 (+)
CI01000039_04048342_04049635 NA other downstream 622738 4048079 ~ 4049972 (+)
G180149 NA other downstream 649321 4079419 ~ 4079563 (+)
G180156 NA other downstream 665443 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 798024 4223868 ~ 4224657 (+)
CI01000039_04829464_04847182 ZFR other downstream 1418627 4829413 ~ 4848563 (+)

Expression


Co-expression Network