G179961


Basic Information

Item Value
gene id G179961
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3509407 ~ 3541121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204329
CCATGTTGAGGACACCTCCACTATCCAGCACCGGCATTAGGTTGATGGCAAATATCGCTGCCCGGTCAGGAGGGATGGAGATGTTGGGTCCAAAGAAGATGTAAAAATGAACTGAAAATGTGTCCAGTTCATTTCGCAGCGTTGGCCGGATGGGCCAGCATTTATTCGTGTCGGCCGTGGGTGCTAAGTAAGTGATGCTGTCTTCAGCGTTCAATAGAGATCCTTGATCCGAACTGTTCTGGGGCACGTTAGGCAGGCTGGCAGCAGGCAGGGTCTCTGACAGAGAGAAACCCATCGCAGTGCCAAATGACTGGGGCATGTTCATAGCTGAGGAGCCCTTGGAGACACTGGGCTTGGAACAGTCTTTAACCTGAACACCAATACGAAAGTAGACATCTGAGCTACTGAGGTAACGCTCCACCAAAATATAGTACCACTGCTCCCAGGATGGCAGTGGGACCTCTAGCTCACAGGGAACGTTTTCTCTGCAGTCCATAGCGCTGGAGTTATGCACCGGCGGGGCCCTCGAGCGGATCTTCAGTAGAACCGGACAGCTCTCCCCGCTCCTGTTCTTTGTATTGCAGTCCACAAGCTGTACCTTCACCCGAGAGATGTAGTTTGGGATGAACACTTTGTAGAGTACAGATCTATTGTGAAGAGGAATCATCTGGTCAATGAAGTAACCAGGATACAGCACTGAAATCCCAATGAGCCTCTGAACGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU204329 True 725 lncRNA 0.51 3 3509407 3541121

Neighbor

gene id symbol gene type direction distance location
CI01000039_03454189_03458136 NA coding upstream 51267 3454040 ~ 3458140 (+)
CI01000039_03359162_03369982 NA coding upstream 139004 3358895 ~ 3370403 (+)
CI01000039_03352914_03354134 GAS1A coding upstream 154931 3351530 ~ 3354476 (+)
CI01000039_03181221_03188468 FBP2 coding upstream 320172 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 330134 3169850 ~ 3179273 (+)
CI01000039_03596770_03597721 NA coding downstream 54876 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 110315 3651436 ~ 3658264 (+)
CI01000039_03659569_03662364 NA coding downstream 118448 3659569 ~ 3662652 (+)
CI01000039_03665710_03683733 NA coding downstream 124126 3665247 ~ 3683850 (+)
CI01000039_03684191_03691901 MCCC2, MCCC2.S coding downstream 143070 3684191 ~ 3691932 (+)
G179959 NA non-coding upstream 21042 3488048 ~ 3488365 (+)
G179951 NA non-coding upstream 48011 3460590 ~ 3461396 (+)
G179899 NA non-coding upstream 95231 3411792 ~ 3414176 (+)
G179901 NA non-coding upstream 97976 3411007 ~ 3411431 (+)
G179900 NA non-coding upstream 99009 3409291 ~ 3410398 (+)
G180008 NA non-coding downstream 53506 3594627 ~ 3595520 (+)
G180018 NA non-coding downstream 86075 3627196 ~ 3627505 (+)
G180026 NA non-coding downstream 162274 3703395 ~ 3703604 (+)
G180028 NA non-coding downstream 165778 3706899 ~ 3707151 (+)
G180029 NA non-coding downstream 166303 3707424 ~ 3707992 (+)
G179903 NA other upstream 83852 3424037 ~ 3425555 (+)
G179798 NA other upstream 377223 3129572 ~ 3132184 (+)
G179528 NA other upstream 1010788 2497674 ~ 2498619 (+)
G178423 NA other upstream 2523655 966676 ~ 982406 (+)
CI01000039_04048342_04049635 NA other downstream 507172 4048079 ~ 4049972 (+)
G180149 NA other downstream 533755 4079419 ~ 4079563 (+)
G180156 NA other downstream 549877 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 682458 4223868 ~ 4224657 (+)
CI01000039_04829464_04847182 ZFR other downstream 1303061 4829413 ~ 4848563 (+)

Expression


Co-expression Network