CI01000039_04223888_04224220 (EMC6.S, EMC6, EMC6.L)


Basic Information

Item Value
gene id CI01000039_04223888_04224220
gene name EMC6.S, EMC6, EMC6.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4223868 ~ 4224657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_04223888_04224220.mRNA
ATGGCCACAGTAGCAGCCAAGCGCGAGGGACCGCAGTTCATCAGTGAGGTGGCCGTCAGAGGAAACAACGCTGTGCTCGACTACTGCCGCACGTCCGTGTCTGCTCTGTCCGGAGCGACAGCGGGCATCCTTGGGCTAACGGGACTCTACGGCTTTGTCTTTTACTTCCTTGCTTCTTTCCTGCTGTCTTTACTCCTGATTCTCAAAGCCGGTCGCCGATGGAACAAGTGCTTCAAATCTCGACGTCTGCTCTTTACCGGAGGCCTCGTGGGCGGCCTCTTTACTTACGTGCTGTTCTGGACTTTCCTCTACGGAATGGTGCATGTGTACTGAAGGGATTCGGACAGTACAGCAGCCGTGTAGATGTAGAACAGTAACATGATAGAGATGCCTCAGGGTAGAGAGTGCTGATTGATGTACCACAGATCTTGTCCGTGACCTTACTTCCGTTTAGCCATTAACATTTAAAATATTTTCTCAGTACTAATTGCACTGAACTTTAGATATTTAAAAATTGTGTGTTTTCTTTCTTTCCTCTTGTAATTTAATATTTTCCTAACACTTGTTTCAGGGCTGGGATTGGATCTAGTGTTGTCCAACAGGGAGACTGATTTGTTTTCAGCTTGCTTTCTTTGTATGATGTGCAAAACTCTGTGAACTCCAGGCATCAATTGGAACCATGTAAAAAACACAATACAAACTTTAAACTGTATAAATCACATAATTTTATTTCAGATATTTTGAGGAAA

Function

symbol description
emc6 Predicted to contribute to membrane insertase activity. Predicted to be involved in autophagosome assembly; protein insertion into ER membrane by stop-transfer membrane-anchor sequence; and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC6 (ER membrane protein complex subunit 6).

GO:

id name namespace
GO:0097631 integral component of omegasome membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_04223888_04224220.mRNA False 749 mRNA 0.44 1 4223888 4224636

Neighbor

gene id symbol gene type direction distance location
CI01000039_04198172_04200073 FAM222BA coding upstream 23728 4197246 ~ 4200160 (+)
CI01000039_04108687_04120437 FLOT2A, FLT2, FLOT2B, FLOT2 coding upstream 103451 4108687 ~ 4120437 (+)
CI01000039_04078795_04079273 NA coding upstream 144615 4078745 ~ 4079273 (+)
CI01000039_04070151_04075216 NA coding upstream 148527 4070098 ~ 4075361 (+)
CI01000039_04065787_04066284 NA coding upstream 157257 4065669 ~ 4066653 (+)
CI01000039_04244908_04247540 CENPV coding downstream 19868 4244504 ~ 4247540 (+)
CI01000039_04295776_04307914 NCOR1 coding downstream 71140 4295776 ~ 4307914 (+)
CI01000039_04364813_04366029 NA coding downstream 139533 4364169 ~ 4366231 (+)
CI01000039_04370566_04373090 NA coding downstream 144991 4369627 ~ 4373462 (+)
CI01000039_04384983_04394003 NA coding downstream 160184 4384820 ~ 4394124 (+)
G180180 NA non-coding upstream 1162 4222478 ~ 4222726 (+)
G180191 NA non-coding upstream 4041 4219148 ~ 4219847 (+)
G180183 NA non-coding upstream 7702 4215970 ~ 4216186 (+)
G180173 NA non-coding upstream 8310 4214958 ~ 4215578 (+)
G180165 NA non-coding upstream 88516 4134383 ~ 4135372 (+)
G180195 NA non-coding downstream 14644 4239280 ~ 4239507 (+)
G180161 NA non-coding downstream 15677 4240313 ~ 4242363 (+)
G180196 NA non-coding downstream 19603 4244239 ~ 4244503 (+)
G180166 NA non-coding downstream 24838 4249474 ~ 4252262 (+)
G180210 NA non-coding downstream 182387 4407023 ~ 4407280 (+)
G180156 NA other upstream 132280 4090998 ~ 4091608 (+)
G180149 NA other upstream 144325 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 173916 4048079 ~ 4049972 (+)
G179903 NA other upstream 798333 3424037 ~ 3425555 (+)
G179798 NA other upstream 1091704 3129572 ~ 3132184 (+)
CI01000039_04829464_04847182 ZFR other downstream 619546 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 3096048 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 3671240 7896773 ~ 7905162 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location