Gene
RNA
| Item | Value |
|---|---|
| gene id | G180165 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000039 |
| NCBI id | null |
| chromosome length | 8355537 |
| location | 4134383 ~ 4135372 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU204582 | True | 990 | lncRNA | 0.36 | 1 | 4134383 | 4135372 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000039_04108687_04120437 | FLOT2A, FLT2, FLOT2B, FLOT2 | coding | upstream | 13946 | 4108687 ~ 4120437 (+) |
| CI01000039_04078795_04079273 | NA | coding | upstream | 55110 | 4078745 ~ 4079273 (+) |
| CI01000039_04070151_04075216 | NA | coding | upstream | 59022 | 4070098 ~ 4075361 (+) |
| CI01000039_04065787_04066284 | NA | coding | upstream | 67752 | 4065669 ~ 4066653 (+) |
| CI01000039_04062068_04062375 | NA | coding | upstream | 71445 | 4062003 ~ 4062961 (+) |
| CI01000039_04198172_04200073 | FAM222BA | coding | downstream | 61874 | 4197246 ~ 4200160 (+) |
| CI01000039_04223888_04224220 | EMC6.S, EMC6, EMC6.L | coding | downstream | 88516 | 4223868 ~ 4224657 (+) |
| CI01000039_04244908_04247540 | CENPV | coding | downstream | 109132 | 4244504 ~ 4247540 (+) |
| CI01000039_04295776_04307914 | NCOR1 | coding | downstream | 160404 | 4295776 ~ 4307914 (+) |
| CI01000039_04364813_04366029 | NA | coding | downstream | 228797 | 4364169 ~ 4366231 (+) |
| G180188 | NA | non-coding | upstream | 369 | 4133761 ~ 4134014 (+) |
| G180185 | NA | non-coding | upstream | 4889 | 4129254 ~ 4129494 (+) |
| G180160 | NA | non-coding | upstream | 8452 | 4125548 ~ 4125931 (+) |
| G180157 | NA | non-coding | upstream | 41548 | 4092488 ~ 4092835 (+) |
| G180156 | NA | non-coding | upstream | 42775 | 4090998 ~ 4091608 (+) |
| G180173 | NA | non-coding | downstream | 79586 | 4214958 ~ 4215578 (+) |
| G180183 | NA | non-coding | downstream | 80598 | 4215970 ~ 4216186 (+) |
| G180191 | NA | non-coding | downstream | 83776 | 4219148 ~ 4219847 (+) |
| G180180 | NA | non-coding | downstream | 87106 | 4222478 ~ 4222726 (+) |
| G180195 | NA | non-coding | downstream | 103908 | 4239280 ~ 4239507 (+) |
| G180149 | NA | other | upstream | 54820 | 4079419 ~ 4079563 (+) |
| CI01000039_04048342_04049635 | NA | other | upstream | 84411 | 4048079 ~ 4049972 (+) |
| G179903 | NA | other | upstream | 708828 | 3424037 ~ 3425555 (+) |
| G179798 | NA | other | upstream | 1002199 | 3129572 ~ 3132184 (+) |
| CI01000039_04829464_04847182 | ZFR | other | downstream | 708810 | 4829413 ~ 4848563 (+) |
| CI01000039_07324920_07329407 | NA | other | downstream | 3185312 | 7324596 ~ 7329472 (+) |
| CI01000039_07898330_07904918 | DPF2 | other | downstream | 3760504 | 7896773 ~ 7905162 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| striped catfish (Pangasianodon hypophthalmus) | LOC113531571 | NA | non-coding | NC_047621.1 | CM018567.1 | 6534109 ~ 6535434 (-) |
| tiger barb (Puntius tetrazona) | G37023 | NA | non-coding | NC_056703.1 | CM032072.1 | 15813103 ~ 15814248 (+) |
