LOC113531571


Basic Information

Item Value
gene id LOC113531571
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6534109 ~ 6535434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453161
GTGATATGAAGGCGTGTCCTTCCAAATGTACAGGCACGCTAAAGTCAGGAGTTACTGTTTGGTGGTTGATAGAGGAcaggaatctgattggttgaaaggCGAGAAAGGAGAGCCCAGATAAGAGCGAGACAACCCTCGTGTCATCACCATATGCAAATGAGTAAAGGTCATTAAAACGCTGAGGGAAGGGGGATATTTGACAGAACTCTGGGGGGGACGCTGGACAGAATGGAGACACCGAGCCTGCAGACAAatagaaaggaaggaaagatgaCAAGGAAGGTGTCAAGCGAGTGTAATTAAGCTGTGTGTTAACACCTACTTCAAGGGGATTCGAAACAAGTGACCTTAAGGAATGATCCGGATATTTCTCGCATAAACGCTCTTGAGATCTTATATTGTCTCCTGGACAGGATATCATCATATACTGTAAGTTCATTATGGAGACACTACAGTATAGATGATGTACTATCCAGGACGGCATTCCTCCTCCTGTGGgttacctcacacacacacacacacacagtcgatGATAGAGGGAGGCGGTTAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCTCTTGCTTCTTCTCACTGACACCAACCATCGAAGACACCGAAAGGAATTAACTgcatatgaatattttgaaaatttgtACAAAATATACTTCCAtgttatataactatataattaattcttatttaatttaatgtaacatAACTTGATGGGGAACTACACACTGAATCTTCTGGAATAGTCTAGATATTCATATTAGTATAAGTGAAATCAATGCATTAATTCAgtaaaaagtttattttgcaTGCAGGCTGTGTTTAtgattgtgtattttgtgtattatgAATGTTTTGAATTAACAATTCAATAGCATGTCAGTAGTAACTACTTTCAGTCTATAAATGTATTATGTTGTGCTTTGGTGAATTGTTCTATTAATTCTCATAGCTATTCGTCATGCATGTATCATACAAGACCATTTCAGGTCATCAAgttcgatttttttttattggcaacCGAGTATAGCTAATAGCAAATATTATATGCTGTGAATATTATCAATATTGTATGTACTATGTCTCAATAAACACATCCACCT
>XR_003403265.2
GCTGAGGGAAGGGGGATATTTGACAGAACTCTGGGGGGGACGCTGGACAGAATGGAGACACCGAGCCTGCAGACAAatagaaaggaaggaaagatgaCAAGGAAGGTGTCAAGCGAGTGTAATTAAGCTGTGTGTTAACACCTACTTCAAGGGGATTCGAAACAAGTGACCTTAAGGAATGATCCGGATATTTCTCGCATAAACGCTCTTGAGATCTTATATTGTCTCCTGGACAGGATATCATCATATACTGTAAGTTCATTATGGAGACACTACAGTATAGATGATGTACTATCCAGGACGGCATTCCTCCTCCTGTGGgttacctcacacacacacacacacacagtcgatGATAGAGGGAGGCGGTTAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCTCTTGCTTCTTCTCACTGACACCAACCATCGAAGACACCGAAAGGAATTAACTgcatatgaatattttgaaaatttgtACAAAATATACTTCCAtgttatataactatataattaattcttatttaatttaatgtaacatAACTTGATGGGGAACTACACACTGAATCTTCTGGAATAGTCTAGATATTCATATTAGTATAAGTGAAATCAATGCATTAATTCAgtaaaaagtttattttgcaTGCAGGCTGTGTTTAtgattgtgtattttgtgtattatgAATGTTTTGAATTAACAATTCAATAGCATGTCAGTAGTAACTACTTTCAGTCTATAAATGTATTATGTTGTGCTTTGGTGAATTGTTCTATTAATTCTCATAGCTATTCGTCATGCATGTATCATACAAGACCATTTCAGGTCATCAAgttcgatttttttttattggcaacCGAGTATAGCTAATAGCAAATATTATATGCTGTGAATATTATCAATATTGTATGTACTATGTCTCAATAAACACATCCACCTGAATCAA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453161 True 1124 lncRNA 0.38 2 6534116 6535434
XR_003403265.2 False 954 lncRNA 0.36 2 6534109 6535257

Neighbor

gene id symbol gene type direction distance location
fam222ba fam222b,LOC108437643,LOC106603497,LOC106567988,LOC107680824 coding downstream 16643 6454941 ~ 6517466 (-)
cenpv cenpv,LOC107746825,LOC107680877 coding downstream 157876 6369797 ~ 6376233 (-)
ncor1 ncor1 coding downstream 190801 6266788 ~ 6343308 (-)
LOC113531046 NA coding downstream 273848 6256584 ~ 6260261 (-)
LOC113531044 NA coding downstream 282677 6247885 ~ 6251432 (-)
LOC113531624 flot2,flot2a,LOC102783242,LOC102192314,LOC100700865 coding upstream 11475 6546909 ~ 6572843 (-)
dhrs11a dhrs11,LOC107562199,LOC107654319,LOC107591475,LOC107665172 coding upstream 43676 6579110 ~ 6609963 (-)
ggnbp2 ggnbp2 coding upstream 76406 6611840 ~ 6625651 (-)
pigw pigw coding upstream 93314 6628748 ~ 6632668 (-)
znhit3 znhit3 coding upstream 118630 6654064 ~ 6657989 (-)
LOC117596268 NA non-coding downstream 410 6524969 ~ 6533699 (-)
G382066 NA non-coding downstream 232953 6300629 ~ 6301156 (-)
LOC113531450 NA non-coding downstream 287266 6243362 ~ 6246843 (-)
G382040 NA non-coding downstream 399684 6132107 ~ 6134425 (-)
G381987 NA non-coding downstream 418792 6111546 ~ 6115317 (-)
G382199 NA non-coding upstream 5908 6541342 ~ 6541545 (-)
G382200 NA non-coding upstream 7133 6542567 ~ 6542844 (-)
G382202 LOC108260093 non-coding upstream 8842 6544276 ~ 6544860 (-)
G382515 NA non-coding upstream 394734 6930168 ~ 6933129 (-)
G382514 NA non-coding upstream 398275 6933709 ~ 6934604 (-)
emc6 emc6 other downstream 126271 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 150425 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 271643 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 296504 6224444 ~ 6237605 (-)
LOC113531448 lrrc75a,LOC108430414 other downstream 360342 6148280 ~ 6173767 (-)
LOC113531451 LOC108260064 other upstream 273991 6809425 ~ 6824444 (-)
G382719 cit other upstream 740237 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 1113859 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 1264204 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 1353626 7889060 ~ 7986733 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G180165 NA non-coding CI01000039 null 4134383 ~ 4135372 (+)
rainbow trout (Oncorhynchus mykiss) G1063601 NA non-coding NC_048576.1 CM023230.2 34961607 ~ 34962942 (+)
tiger barb (Puntius tetrazona) G37023 NA non-coding NC_056703.1 CM032072.1 15813103 ~ 15814248 (+)