G382040


Basic Information

Item Value
gene id G382040
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6132107 ~ 6134425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452966
gaaaataataatttgggTCTCTAATTGAAAAGGAGAGACTCCTTTATTAAGCGGTTATGATTAATGAGATGGGAGGAGGAGTAGCGCTAGCGATAGCGCCGCTTAGCCGAGgccttattctctctctctctctctctctctctctctctgtgttgaaACCCAGCCAAACTCAGTCATATTCTTTGCAATTAACACACATTTCACCATTGTATACTTTCAgaatattatcattttaaacagcagcagcagtgttaaTGAACGCGTCATTTTGAGCCGCTGAGATTAGATGAACTGCTCATTTCCAGGCTAACAGCATGCTAGCTAGCACTATATCACCGAGTCACGTTATTAACAAGAAGGCTTAATATTGATTTAAACGCGCACACTTGTCTTTAGAGTGATTTTGGATTTAGTAAGATATACAGTTATACTCTAATTCGTTGACTCACACTGCActgtaactttatattttacttaattaGCATAAAAGGCGTAATAATATGCAGTAGCGTTAGCTTCTGCCTTTAAAGTGAACACGAGTAATGCTAGACCTAGGCAGCTGGCTAATTTTATTTCATAGCTTGTGCCCCTAACTAGTTATAAACCAACTCATATGACTCAGTCAAACTTTAGTAGTTAAGTTAGATAAAATTCACCCTCTTTAACAGCTAGCGTTATTTTATTAGCCATCCATGCTGCGTTCAATATACCCAAACTGAGCGTTTTATTAACCAGCTAATGTGGCATCACATGTCGTTTCTAAGACTTAGTACGAATTTGGTAGAAGAGCTAGCCAAATAAATCAGACCATTGCTGTCTGAAGagctatttatgtttaataGACTGCGGAGAAATGGTTTTCCATGTCAATCAGGATATGTAGCAGTGCAGTGGAGGTTGCTTTGTAATCACACATCCTCTGTGCTTTAGGAGTGAACAACATCAGCGTAGATACTGGCCTAAAACACTGAATTAAAGGAAGAGTCCACCCttaaacacactaaatgtgTTTACTTTGAAAGAATTGTGCTGTGCTTAGTAGTTCTGGTCCTAATTTGTTGGCTGGTGCCGTTTTAacgttattcctgtgagaagttagtggttgtggCCGTGCTGACGTCACAAGAGGACATTGCTATTGTTTGTGCAGGAACATCGGCGTTTAATAGGAAAACACGGTTCAGCAATCTTAAATACAAGGAATAACGATCTGGTTTCACTGGTAGCTCCTAAACACAAAAGAGTAAGCTTCTTTTCTGactcactgatttttttaaacaacattgtttaaagttatattaatgagaaatacaACAACAAAGTAGAGGAGGCATTGGCGCAAATGTTAGACTCAGAGTTCCAggatgcaatgcagctataacACTATAGACTCAGCAAGTTAGtgatctacgagatgacgagCAGTGCACAGAGAACCGAGTAGACGAAACACTAACGCGCCATTGCAGTGCTCTCTTCAGGTAGAGATGAACTGAAGGTGAAATCCCACTGGCTCTGCTATGAGCAGGTAGTCAAACGGTAAtgtttaaaccattaaaatgaaaatagactGACATGACGATGAAAGACattaatctaaaataaaattcaactcATACAATAAATCTTGGGTGCTATTGAAGATCACTTGTTAAGTATTAAGATGAGTATGCAAGGGTTGATTTTTCCTTTAGCTTCCTTTATGAAAAGTTCAGCAACAGAAGGTTGCAGCGAGTTAGATTGAACCCTGAGTCTACTAGCATCAGATGCTCAGGTACAACACTATACCGTAACATATTCCTgattctttattttgtttttatttcctttgaGTGAGTCGTACCATAACTAAGCACCTGGGCTCAATTCTGTTCCTTTTCTTATCCAGGTACCATGCGAGTCTAACCGGGATGTTCACATGCATGGagctaaaaatagtgcagaTCAGTTAGAACTGTCGCGAGTCAGGTCAGATGCCACTATTTGCAAAAACACTAGCTAGACTCACTTTTCTCCTGGACAGCatgacattttcagtgttttagtgTAACGTCTCcaaagtttgtttctttttacgCGTCCTTTTTTCTCCTAGCTTTCACAGTTTCTCATCTGATGTTAGAAGTGTTTTCAGAAAGGTTTTGTATCACTAATATTTAGCTCAGTTTGACATTTCTTGCTCTACCCATGATCTTCAAGTGAGCTGGAATCCTAAAAGTATAGTtaactatatatgctcactacatcaGTGTTTAATGTAACCACATTGTAGAGCCTCTATAGTACACTACAGACTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452966 True 2298 lncRNA 0.39 2 6132107 6134425

Neighbor

gene id symbol gene type direction distance location
LOC113531447 LOC108259779 coding downstream 155271 5975371 ~ 5976836 (-)
kat5b kat5,kat5b,LOC108427799,LOC108427738 coding downstream 162287 5959148 ~ 5969820 (-)
zfpl1 zfpl1 coding downstream 375997 5750520 ~ 5756110 (-)
zgc:171967 LOC108260090,LOC108427707,LOC107702959 coding downstream 387068 5730519 ~ 5745039 (-)
LOC113531443 edf1,LOC108260092,LOC102798323 coding downstream 402996 5723424 ~ 5729111 (-)
LOC113531504 LOC108260055,LOC108430459 coding upstream 5950 6140375 ~ 6144727 (-)
poldip2 poldip2,LOC108430460,LOC105906690 coding upstream 43379 6177804 ~ 6198351 (-)
sebox LOC108259801 coding upstream 67621 6202046 ~ 6205610 (-)
LOC113531102 LOC108260326 coding upstream 76605 6211030 ~ 6223759 (-)
LOC113531044 NA coding upstream 113460 6247885 ~ 6251432 (-)
G381987 NA non-coding downstream 16790 6111546 ~ 6115317 (-)
G381817 LOC108259745,LOC108427774,LOC107695997,LOC107741023 non-coding downstream 223685 5906224 ~ 5908422 (-)
G381806 NA non-coding downstream 241697 5889788 ~ 5890410 (-)
G381676 NA non-coding downstream 330613 5749511 ~ 5801494 (-)
G381685 smyd1 non-coding downstream 436992 5692297 ~ 5695115 (-)
LOC113531450 NA non-coding upstream 108937 6243362 ~ 6246843 (-)
G382066 NA non-coding upstream 166204 6300629 ~ 6301156 (-)
LOC117596268 NA non-coding upstream 390544 6524969 ~ 6533699 (-)
LOC113531571 NA non-coding upstream 399684 6534109 ~ 6535434 (-)
G382199 NA non-coding upstream 406917 6541342 ~ 6541545 (-)
G382036 NA other downstream 24113 6104531 ~ 6107994 (-)
LOC113531542 znf596 other downstream 999980 5121668 ~ 5132127 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 1823095 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 1939195 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 2064490 4067030 ~ 4067617 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 13855 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 90019 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 126191 6260616 ~ 6262466 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other upstream 184552 6318977 ~ 6383684 (-)
emc6 emc6 other upstream 187337 6321762 ~ 6407838 (-)

Expression


Co-expression Network