G381685 (smyd1)


Basic Information

Item Value
gene id G381685
gene name smyd1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5692297 ~ 5695115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452549
ttttatctattaCCAGGCACCACTGTATTAAGCGCCTGCTTCTTATGTACATGTTATATATAGCAGTTAAAACTTTTTGATACAGCTTACCTCATGAAAGTTTCCCTCCATGCGAGCTTGCTCAATTTTGGCCAAAGCCTCCACACTAAAGTCTGTGACCTCCTTCACCAGCTCGGCCGAAGGCTTTTTTGCCTTCTGTCTCTTTCACTGCCATCATGAGGTCGTCCTTGATGCCATTGCTGCAGTGCTCGCACTTGCAGTCAAAGTAATACTGCTTCTTGAGTAGCTTCTGACGATCTTTGGATAAGTTTAAGAAGTCCACATAGCTGACCGTCAACTCGACACCTTCTGGGATCTTTTCTAAGGCGCGCAGCTCAATCCTACCATCAGGACAGAACAGTGACATCGTCAGAGGAAAGGGttagaggaagagaaagaagttTTAGATGAAGCATTACATAGGAGAACATTATTGTCAGTTGATACACTAATGTTTTGAGTTGTAAATGCATGCTTTCATGGGGATCTGAGGTTATATGTTGTAGAAAAAATACATTGAACACAAGCATGATGCATAAAAATATGCTTAACCAGACGTAAAATAATGATCCGTGCTTCCAAAGCATACAACTCTATTCAATCTGTACACATATTTCCAAAAAACAAATTGCAATGCGTCTAATGCAAATCCCAAAATCAAACCATATAAGGCTAAATTGAAAGTCCTTAAatgctttaattaatataaattatcaTTTTACTTTACACTAGCCATTCAGTTtagtaacattaacaccactGCAGAGATTAAGTTTCATAAATGTCACATACAGACCAATTTAAACTTAAAGGTTAAAATTCAGTTACACTCCACTAGCCTACCTCCTCTGAGAGTGTAAAGCTGAGTCCAGAGCTGTCTGACTGGAAGAGAAGGCAGAAGGCAAGAGGCCAGATCACAGTCGACTACAGAGCAACATGATTTAAATGTCATTTCACTTGCTTAGCTAGACCGGGTACTAGATTTCTTAAGTAAACcatacaaatgtacaattttttttcagccacaATTTACTGAAACGCCTCAGGAACTGAAAGTCCTGTCTTGTTGTCCTGTTTGTtacattcatatatttataagCATAGGTATTCTGTAATAAAGAACATGGTTGTACACCAGTAGATCTAGACAACTATTTATTTAGTTCATTCACACTACCTGACTTGAAAAACTTGGAAAATTGTTAATattacacaattaaataaacatactACAGAAGTCTTGTCAGGTCTTCTCACCTGCCATGATTGAGGATGACTGTACAGTTGGGCCAGCAGTCATGGTTGACCAGACAGAGGTTAGGAAAAAGGCCCACTCCGACTGCCTGGAGCCCACGCTGGTCACTCAGAGTGAAGGCATTGCAGTTGATCTGAAAAGGAAATACAGATATGAAGCAGTACAAATGTGTAGGTATAGCATTCCACCAGTCTTATAGTTTATATGCTGTGTATTATGTTGTCGTTTTTATTATAGAGTTTGCAGGTGGACAGTGAAGGCGTGCCTACCACACCAAAGATATGTGAGACGTAGTCTGTGCTATACTGCTTGCTGTTGCCTTGCCAGTAGTCCTGGAAGTTGTCAACATCCACTTTGAGCTGTTTAAGGTCCTCTGGGGTCATTGCAGAGATGTGGTCCTCCAAGAGGTCTAGAGTTGTGAGCTGTGTGTCGAAGATTTTTCCCTTGTGTTTCTGCATGCGCCATAGAGCTCGTGCCGCCAGA

Function

symbol description
smyd1 Predicted to enable histone-lysine N-methyltransferase activity. Involved in positive regulation of myoblast differentiation and positive regulation of myotube differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452549 True 1777 lncRNA 0.40 2 5692297 5695115

Neighbor

gene id symbol gene type direction distance location
exosc2 exosc2,exos2 coding downstream 14883 5671420 ~ 5677414 (-)
abl1 abl1,LOC107597931,LOC107674916 coding downstream 23750 5635300 ~ 5668547 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding downstream 85824 5595918 ~ 5606473 (-)
lman2la lman2l,LOC102299173,LOC102779830,LOC107095700 coding downstream 465608 5219896 ~ 5226689 (-)
pax8 pax8,LOC106566842,LOC106563295 coding downstream 513076 5165215 ~ 5179221 (-)
oxt LOC108260424 coding upstream 12015 5707130 ~ 5709601 (-)
LOC113531443 edf1,LOC108260092,LOC102798323 coding upstream 28309 5723424 ~ 5729111 (-)
zgc:171967 LOC108260090,LOC108427707,LOC107702959 coding upstream 35404 5730519 ~ 5745039 (-)
zfpl1 zfpl1 coding upstream 55405 5750520 ~ 5756110 (-)
kat5b kat5,kat5b,LOC108427799,LOC108427738 coding upstream 264033 5959148 ~ 5969820 (-)
LOC117596288 NA non-coding downstream 106329 5579724 ~ 5585968 (-)
G381543 NA non-coding downstream 191984 5500087 ~ 5500313 (-)
G381493 NA non-coding downstream 344030 5348055 ~ 5348267 (-)
G381463 NA non-coding downstream 458057 5228878 ~ 5234240 (-)
G381366 NA non-coding downstream 575308 5115429 ~ 5116989 (-)
G381676 NA non-coding upstream 54396 5749511 ~ 5801494 (-)
G381806 NA non-coding upstream 194673 5889788 ~ 5890410 (-)
G381817 LOC108259745,LOC108427774,LOC107695997,LOC107741023 non-coding upstream 211109 5906224 ~ 5908422 (-)
G381987 NA non-coding upstream 416431 6111546 ~ 6115317 (-)
G382040 NA non-coding upstream 436992 6132107 ~ 6134425 (-)
LOC113531542 znf596 other downstream 560170 5121668 ~ 5132127 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 1383285 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 1499385 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 1624680 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1734523 3885884 ~ 3957774 (-)
G382036 NA other upstream 409416 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 453165 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 529329 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 565501 6260616 ~ 6262466 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other upstream 623862 6318977 ~ 6383684 (-)

Expression


Co-expression Network