lman2la (lman2l,LOC102299173,LOC102779830,LOC107095700)


Basic Information

Item Value
gene id lman2la
gene name lman2l,LOC102299173,LOC102779830,LOC107095700
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5219896 ~ 5226689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921576.2
GCGCTCAGAGGATTGTACTAGAAATACGATGGCCGCCGCCTTACGTTAtctctgaaaacacacagaggagagagtGAATGTGTGCGAAAATGGCTCCAGTTACACTGACACTCTGTGTGATATTCATTGCGTCTTTAAAATCTTGCTTGTCTGATGATGGCCATGAAATGGAGGAGTTTTTAAAGAGAGAATATTCGTTGTCGAAGCCATACCAAGGAATCGGCTCTTCCGGCTCTTCGCACTGGGAGCTGATGGGTGATGCCATGGTAACCACTGATCAGGTGCGCCTCACTCCGGATCTGCAGAGCAAGCAGGGGGCAGTGTGGAGCCGCATAccgtGTCACTTGAAAGACTGGGAACTGCAGGTACACTTTAAGATCCATGGTCAGGGGAAGAAGAACTTGAATGGAGACGGTCTGGCCGTGTGGTACACAAAAGAGCGCATGCAGAAAGGTCCAGTGTTTGGAAATAGAGATTTCTTCACAGGGTTAGGAGTGTTCGTAGATACTTACCCTAACGAGGAAAAACATATAGAGGCTCAGAAGAAAAGGTACACCCCTCGCACACAGAGGATCTTCCCGTACATATTAGCGATGGTGGGGAACGGCACGATCAGCTACGATCACGAGCGTGATGGCCGACCCACGGAGCTGGGCGGCTGCAACGCCATGGTGCGCAACCTCAAACACGacaccttcatcttcatcagaTACGTCCGGCGTAGACTCACGATCATGATTGATATCGATGGTCAGCATGAATGGAGGGACTGCCTGGACATCCCGGGTGTGCGGCTACCTCAGGGCTACTACTTCGGCGCCTCGGCCATCACCGGAGACCTCTCGGacaACCATGACCTCATCTCTCTGAAGCTGTACCAGCTGACAGTACTCCGGAGTAAACTAGAGGAAGACGATGAGGAAGAGGTCACAGTTCCAAGTGTGGATAATATGGAGCTAATCAGGAACTACCAGGAAGGGGAGGGAATGAGCAGCATTGCTATCTTCTTCACCGTGCTCTTCTCCATGCTGGGCCTCTTCCTTCTCATCGTTGTGGGCCTTGTGGTTTACAGCCACTGGAACGAGAGCCGACGCAAACGCCTCTACTGAGCTCTCAGCAGGTTGAGACTGCATGTAGAGCTTATGGATTGGGCTCAGTGGGTTCATGAGCTCCAAAACACCCCCCATGTCAGTGCACACTGAACAAATGGGTTTGATTTTatgcaggaaggaaggaaggatgaaaGACTCAACCATGAGATCTAAGGAGTTTTAAACACTAAGAGCAAAGCAATGTGGGAAATGGGATTCAACCCCAAACCAGCAGGGCCTTAAAAGTTTGAAAGTATTTCTCGTATAAGATAAATGCGTTTTAAGTGTAAATAGAAAACTGCCTTTGACTGTGTCTTTTTCCACTACAGCtccaatatttataatttaatttaaattaattttgttttgcattgtatGCCAGGTTGTTAGGCAAACCAATATCCACAAAGGATTAATTAAATCCATATGTTGTGATCACCATGCTGGATTTTTAGAAAACTTGTAAACAAATATCATGCAATTTGACCACTAGCGGGTGCTATGCCacttaaaaaacatttctggttCTCAGAAATGGCTGTTTTTGGAATTTTATACAAGTGTGTTTTTAAGAAACTTCATCAGTGGCAGATTTCAGTAGATATTTGACAAATATTTATCCAATTCATTGTCCCATATTCACAAATATTGACAGGCCGATATGCCTACAAGCTGCAGCATTAAAGTTTATCAACTATGGTACcaacaaaaatgtttgttggcaaaggtttttaaaattgcattaactataaaatgacatgaaaaaattgcattgtgacagatgattttaattaaaattgttgACAAAAATA

Function

symbol description
lman2l Predicted to enable mannose binding activity. Involved in protein transport. Located in Golgi apparatus and endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
VIP36-like protein isoform X2

GO: NA

KEGG:

id description
K10083 LMAN2L, VIPL; lectin, mannose-binding 2-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921576.2 True 1903 mRNA 0.45 9 5219896 5226689

Neighbor

gene id symbol gene type direction distance location
pax8 pax8,LOC106566842,LOC106563295 coding downstream 40675 5165215 ~ 5179221 (-)
bspry bspry coding downstream 150335 5058226 ~ 5069561 (-)
traf2b traf2,LOC107697985 coding downstream 166911 5023375 ~ 5052985 (-)
tmem203 tmem203,LOC106566747,LOC107730349 coding downstream 224330 4992259 ~ 4995566 (-)
tprn tprn coding downstream 229913 4964675 ~ 4989983 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding upstream 369229 5595918 ~ 5606473 (-)
abl1 abl1,LOC107597931,LOC107674916 coding upstream 408611 5635300 ~ 5668547 (-)
exosc2 exosc2,exos2 coding upstream 444731 5671420 ~ 5677414 (-)
oxt LOC108260424 coding upstream 480441 5707130 ~ 5709601 (-)
LOC113531443 edf1,LOC108260092,LOC102798323 coding upstream 496735 5723424 ~ 5729111 (-)
G381366 NA non-coding downstream 102907 5115429 ~ 5116989 (-)
G381355 NA non-coding downstream 125277 5094404 ~ 5094619 (-)
G381353 NA non-coding downstream 136107 5083539 ~ 5083789 (-)
G381352 NA non-coding downstream 138522 5079772 ~ 5081374 (-)
G381343 NA non-coding downstream 162174 5057508 ~ 5057722 (-)
G381463 NA non-coding upstream 2189 5228878 ~ 5234240 (-)
G381493 NA non-coding upstream 121366 5348055 ~ 5348267 (-)
G381543 NA non-coding upstream 273398 5500087 ~ 5500313 (-)
LOC117596288 NA non-coding upstream 353035 5579724 ~ 5585968 (-)
G381685 smyd1 non-coding upstream 465608 5692297 ~ 5695115 (-)
LOC113531542 znf596 other downstream 87769 5121668 ~ 5132127 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 910884 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 1026984 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 1152279 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1262122 3885884 ~ 3957774 (-)
G382036 NA other upstream 877842 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 921591 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 997755 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 1033927 6260616 ~ 6262466 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other upstream 1092288 6318977 ~ 6383684 (-)

Expression


Co-expression Network